Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq8251 120 2e-23 seq1814 120 2e-23 seq9517 116 3e-22 seq1440 116 3e-22 seq2296 78.8 7e-11 >seq8251 Length=2688 Score = 120 bits (132), Expect = 2e-23 Identities = 276/413 (67%), Gaps = 27/413 (7%) Strand=Plus/Plus Query 6228 TAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTT 6287 |||| || ||||| ||||| |||||| || | ||| ||| ||| || ||||||||| Sbjct 237 TAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCTC 293 Query 6288 TAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATT 6347 | ||| |||| | | || || ||||| ||||| |||| | || |||||| ||| Sbjct 294 TCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATT 353 Query 6348 TCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAA 6407 | ||||| | | || ||||||||||| ||||||| ||| || | | || | Sbjct 354 TTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGA 413 Query 6408 TGTTGTCTAG-TACATCAGGACAAGGGTTGGATGACTACTCAGTAGTAT----------C 6456 || || | || | |||| ||||| ||| |||||| ||| | Sbjct 414 TGATG-CAAGCTTCATCTGGACA----------GACCACTCAGAGTTATGATGAGGCGAC 462 Query 6457 TATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGAATCAAATGA 6516 || | || || | ||||| ||||| ||||||||| | ||||| || |||||| Sbjct 463 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 522 Query 6517 TCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCACTAGGACACA 6576 ||| || ||| ||| ||||||| |||||| ||| ||||| || || || || ||||| Sbjct 523 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 582 Query 6577 TGAGTT-TTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTTGATA 6628 ||| || ||||| | | || || | ||||| ||| |||| ||||| ||| Sbjct 583 TGAATTCTTTCG-GGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATA 634 >seq1814 Length=63972 Score = 120 bits (132), Expect = 2e-23 Identities = 276/413 (67%), Gaps = 27/413 (7%) Strand=Plus/Plus Query 6228 TAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTT 6287 |||| || ||||| ||||| |||||| || | ||| ||| ||| || ||||||||| Sbjct 1643 TAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCTC 1699 Query 6288 TAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATT 6347 | ||| |||| | | || || ||||| ||||| |||| | || |||||| ||| Sbjct 1700 TCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATT 1759 Query 6348 TCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAA 6407 | ||||| | | || ||||||||||| ||||||| ||| || | | || | Sbjct 1760 TTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGA 1819 Query 6408 TGTTGTCTAG-TACATCAGGACAAGGGTTGGATGACTACTCAGTAGTAT----------C 6456 || || | || | |||| ||||| ||| |||||| ||| | Sbjct 1820 TGATG-CAAGCTTCATCTGGACA----------GACCACTCAGAGTTATGATGAGGCGAC 1868 Query 6457 TATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGAATCAAATGA 6516 || | || || | ||||| ||||| ||||||||| | ||||| || |||||| Sbjct 1869 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 1928 Query 6517 TCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCACTAGGACACA 6576 ||| || ||| ||| ||||||| |||||| ||| ||||| || || || || ||||| Sbjct 1929 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 1988 Query 6577 TGAGTT-TTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTTGATA 6628 ||| || ||||| | | || || | ||||| ||| |||| ||||| ||| Sbjct 1989 TGAATTCTTTCG-GGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATA 2040 >seq9517 Length=2557 Score = 116 bits (128), Expect = 3e-22 Identities = 275/413 (67%), Gaps = 27/413 (7%) Strand=Plus/Plus Query 6228 TAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTT 6287 |||| || ||||| ||||| |||||| || | ||| ||| ||| || ||||||||| Sbjct 562 TAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCTC 618 Query 6288 TAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATT 6347 | ||| |||| | | || || ||||| ||||| |||| | || |||||| ||| Sbjct 619 TCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATT 678 Query 6348 TCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAA 6407 | ||||| | | || ||||||||||| ||||||| || || | | || | Sbjct 679 TTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTACAACACCGTAGTCAACAAGA 738 Query 6408 TGTTGTCTAG-TACATCAGGACAAGGGTTGGATGACTACTCAGTAGTAT----------C 6456 || || | || | |||| ||||| ||| |||||| ||| | Sbjct 739 TGATG-CAAGCTTCATCTGGACA----------GACCACTCAGAGTTATGATGAGGCGAC 787 Query 6457 TATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGAATCAAATGA 6516 || | || || | ||||| ||||| ||||||||| | ||||| || |||||| Sbjct 788 CATAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGA 847 Query 6517 TCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCACTAGGACACA 6576 ||| || ||| ||| ||||||| |||||| ||| ||||| || || || || ||||| Sbjct 848 TCCGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACA 907 Query 6577 TGAGTT-TTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTTGATA 6628 ||| || ||||| | | || || | ||||| ||| |||| ||||| ||| Sbjct 908 TGAATTCTTTCG-GGATTCATTCTTCTATTACAAAGATCGACCAGATTTAATA 959 >seq1440 Length=90230 Score = 116 bits (128), Expect = 3e-22 Identities = 275/410 (67%), Gaps = 23/410 (6%) Strand=Plus/Plus Query 6228 TAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTT 6287 |||| || ||||| ||||| |||||| || | ||| ||| ||| || ||||||||| Sbjct 51981 TAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCTC 52037 Query 6288 TAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATT 6347 | ||| |||| | | || || ||||| ||||| |||| | || |||||| ||| Sbjct 52038 TCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATT 52097 Query 6348 TCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACTTGAATGATGTCATAAGTAAAA 6407 | ||||| | | || ||||||||||| ||||||| ||| || | | || | Sbjct 52098 TTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACTAGAACACCGTAGTCAACAAGA 52157 Query 6408 TGTTGTCTAG-TACATCAGGACAAGGGTTGGATGACTACTCAGT--------AGTATCTA 6458 || || | || | |||| ||||| || ||| | |||| || | | Sbjct 52158 TGATG-CAAGCTTCATCTGGACA-------GACCACT-CACAGTTATGATGAGGTGACCA 52208 Query 6459 TTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGGAAGGAATCAAATGATC 6518 | | || || | ||||| ||||| ||||||||| | ||||| || |||||||| Sbjct 52209 TAGCAAATCATGTTGATTATGAGAAGTGGAACAATTATCAAAGAGGTGAGGGAAATGATC 52268 Query 6519 CTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTATTCACTAGGACACATG 6578 | || ||| ||| ||||||| |||||| ||| ||||| || || || || ||||||| Sbjct 52269 CGGTCTTCTCAGTCATGGGTCGATTTTTTGGATTACCTAATTTGTTTACGAGAACACATG 52328 Query 6579 AGTT-TTTCGAGAAATCGTTGATTTATTATGTTGATAGACCTGATTTGAT 6627 | || ||||| | | || || | ||||| ||| |||| ||||| || Sbjct 52329 AATTCTTTCG-GGATTCATTCTTCTATTACAAAGATCGACCAGATTTAAT 52377 >seq2296 Length=40579 Score = 78.8 bits (86), Expect = 7e-11 Identities = 113/159 (71%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 6228 TAGTAATAGGTCTAAGAGCTAAAGAAAGAGAATTAAAATTAACAGGGAGGTTTTTTGCTT 6287 |||| || ||||| ||||| |||||| || | ||| ||| ||| || ||||||||| Sbjct 1706 TAGTGATCGGTCTGAGAGCAAAAGAA---GAGCTGAAACTAAAAGGAAGATTTTTTGCTC 1762 Query 6288 TAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTGGCTCATAAAGAAGTATT 6347 | ||| |||| | | || || ||||| ||||| |||| | || |||||| ||| Sbjct 1763 TCATGAGTTGGTCTCTTCGTGATTACTTTGTCATAACGGAGTATTTGATTAAGAAGCATT 1822 Query 6348 TCGTTCCGTTACTAAGAGACTTAACAATGGCAGACGACT 6386 | ||||| | | || ||||||||||| ||||||| Sbjct 1823 TTGTTCCTCTCTGTACAGGATTAACAATGGCTGACGACT 1861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40015612645120