Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20nili_20[genbank_20GCA_5F000439205.1_202013-07-22] 51,048 sequences; 98,320,046 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1636 331 7e-86 seq38620 168 5e-37 >seq1636 Length=7642 Score = 331 bits (366), Expect = 7e-86 Identities = 1185/1839 (64%), Gaps = 43/1839 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || ||||||||||| || || || | |||| |||||| | | ||||||||||| || Sbjct 5992 TCCACCGTGAACTGAATGGCGTTTACCGCCGGCTTGGTACGCAAGTAGTACATGCCCGTT 5933 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || ||||| ||| | |||||||| ||||||| | || |||||||||| || Sbjct 5932 TTAAGGCCCATCTTCCAGCCGTAGAAATGGATCGATGTCAGCTTGCCATAATTCGGTTCA 5873 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGA-CCACGATCTGCAGCCAT 65256 ||||| || || || |||||||| ||||| || |||| || || || || ||||| Sbjct 5872 GCCACGTGAATGTTGAACGACTGTGATTGATCTATA-AACGCTCCTCGGTCGGCGGCCAT 5814 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| | | | |||||||||||||| || ||||| | | ||| | ||| Sbjct 5813 CTTGATGGAAGTTTTTACTGATATCTCCCAGACCGTTTTGTAAATGTCACGAATCTCTTG 5754 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 ||||| ||| ||| | ||||| || || | || | ||| || | | ||| Sbjct 5753 GGGAATTTCCGTAATTTTCTGGATCGATCCGTTGTGCGCCAGAATTCGGTGTCTCATATC 5694 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || |||||| || | || | | | | | | || |||| | ||||| || Sbjct 5693 ATCGTCCCACAAGCCACACTCCGTCAAGTCCTTCAGGAGATGGTGATTCACCACTTGAAA 5634 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 || || ||||| || || | ||| | ||| || ||| ||||| ||||| ||| | Sbjct 5633 TTCTCCCGACAGGACGCGCCTATTATAAACGTTCGATGTGTACGGTTCGAAGGACTCATT 5574 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 |||||| | |||||| || || || || || ||||| || || | || | || || || Sbjct 5573 GTTGCCCAAAATTTGTGCGGTTGAAGCCGTCGGCATCGGTGCCAACAGTAGAGAATTGCG 5514 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 | || | | | |||| || | |||||| |||||||||||| ||| | | Sbjct 5513 AATGCCATGCTTGGCAATCTTCTCTTTCAATTCCGCCCAGTTCCACA--GGTCCGTAGGT 5456 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 | | | | ||||||||| | |||| | | || | || |||| ||| | | Sbjct 5455 GTCTT----GTTCCACATATCGTACTGCAAGATACCCTTGCTTACCGGGCTACCTTCGTA 5400 Query 65677 ACTATCGTACACTCCCTC-CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735 | ||||| ||| || | | ||| | | ||||| | ||| | || | | | Sbjct 5399 CGTCTCGTATGGTCCGTCACGGGCAGCCAACTCG-CAGCTAGCCTCCAAGGCACCGTAGT 5341 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795 | || || || || || | |||| |||| | ||||| || |||||||| || | Sbjct 5340 AGATTGTTTCAAACATTTGCTGATTGAGTTTTTGGGCCTCCTCACTCTCGTATGGGTATC 5281 Query 65796 CCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCA 65855 |||||||| ||| | ||||||| |||||| || |||||||||||||| | || |||| Sbjct 5280 GCATCAGGATAAACGCATCGGCCATACCTTGCACACCAATACCGATGGGCCTGTGGCGCA 5221 Query 65856 AATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 || ||||| | |||||| || || || ||||| ||||| ||||| || ||||| | Sbjct 5220 TGTTCGAACGACGCGCCTCCGGAACCGGATAGTAGTTGATGTCGATGATTTTGTTCAAGT 5161 Query 65916 TGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGAT 65975 | || || || | ||| | | || || | | |||||| | | ||||| Sbjct 5160 TTCGCGTTACGGTCTTAGCGACATCTTTCAGTT-TGC-----CAAAATCGTACGTACGAT 5107 Query 65976 CGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTA 66035 | | | ||||||| || | || | ||||| || ||||| || || | Sbjct 5106 CCGATCT---------CACAAACATGTTTAACGCGATCGATGCAAGATTGCACACGGCAA 5056 Query 66036 TCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGC 66095 ||||||| | | ||||| || || || ||||| || || ||| ||| |||| Sbjct 5055 TCTCGTCCTTTGAAGAGTACTCCACGATCTCCGTGCAAAGGTTTGAGCACTTTATTGTGC 4996 Query 66096 CCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGC 66155 ||| || || || || ||||| || || || ||||||||||||| ||||||||| || Sbjct 4995 CCACGTTTTGCTGGTTGCTCTTTCGGTTACACGCATCCTTGTACAGCATGTACGGCACGC 4936 Query 66156 CGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC----CGTA 66211 |||| || || || || ||||| ||||| ||| || | | ||||| || || | Sbjct 4935 CGGTTTCCACCTGTGATTCAATTATGGCAAACCACAGGTCCTGCGCCTTTACTTGGCGAA 4876 Query 66212 CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCAT 66271 | || ||| |||| ||||| ||||| | | ||||| ||| ||||| Sbjct 4875 TAAAGCGACCTTCCTTC----TCGTAGCCCTCGTACCGTTTCTCGAACTCTTCGCCCCAC 4820 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAA---TCACCATCCTGT 66328 || |||| | || || | || || ||||| || ||| || | ||| Sbjct 4819 GAATCAGACAATCCGGGGCAATCATGCGGGCACATAAGACTCCACATTTCGTTAGCCT-- 4762 Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 | || || ||| |||| ||| |||||||| ||||| ||||| | || || || ||| Sbjct 4761 -CCACTCGCTTCATGAATAAATCCGGTATCCAAAGGGCATAGAACATGTCTCGCGCACGT 4703 Query 66389 TGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 |||||| | || ||| | ||| || ||||| ||||| || | || | ||||| Sbjct 4702 ACCTCCTCCTTCCCTGTGTTCTTTTT-CAGATCGAGAAACTCGAACACATCACCGTGCCA 4644 Query 66448 TGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCG 66507 || ||||||||||| || || | || || || ||| ||||| |||||||| || Sbjct 4643 CGGCTCCAGGTAGATTGCAAATGCTCCGGGTCGCTTATTGCCTCCTTGATCGACGTACCG 4584 Query 66508 AGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || || ||| | || || | |||||| || | || || || | ||||| ||||| Sbjct 4583 CGCCGTGTTATTGTACACGCGAAGCATCGGCACCAAACCATTGGAGATTCCATTTGTGCC 4524 Query 66568 GTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGT 66627 ||||| | ||| || || ||| || || ||||| ||||| |||||||| | Sbjct 4523 CGCGATGTACGTTCCCTTCGCACGGATACAATGCACGTTCAGCCCAATGCCACCGGCTGA 4464 Query 66628 CTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTT 66687 ||| || || || || | || || | | || ||||||||| ||| | Sbjct 4463 CTTTGATATCAGGGCGCACTGTTTCAGCGTATCGTAGATACCGTCAATGCTGTCGTCGGA 4404 Query 66688 GATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGT 66747 || |||| ||| |||| ||| ||| || || |||| || || | || | || Sbjct 4403 CATCGTCAACAGGAAGCAGGAAGAAAGCTGCGGACGTTGTGTCGCCGCAGCAAACATAGT 4344 Query 66748 GGGTGTAGCGTGCGTAAAGTAATGGC-GAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 || | ||| || || || ||| || |||| |||||||||||||||| | |||| Sbjct 4343 TGGAGAAGCATGGGTGAA-AAATCGCTCCGACAGCAGATTGTACGTCTCGATGGCCGCAT 4285 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGA 66866 | || | ||||| ||||| |||| ||| |||||||| | | || || ||||||| Sbjct 4284 CGATATCCTCGCCGTGAATACCGATGGCAACGCGCATCAGCATATGCTGGGGACGTTCGA 4225 Query 66867 CCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCA 66905 | | | |||| || | | | |||||| || |||| Sbjct 4224 CGATCTTGCCCTTAATTTTGAGCAGGTAGGATCGCTCCA 4186 >seq38620 Length=1898 Score = 168 bits (186), Expect = 5e-37 Identities = 200/268 (75%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| ||||||||||| ||||| ||||| ||| | || || |||||||| |||| Sbjct 649 AGGCTGAAGCATCCTTCTGGACCGTGGAAGAGGTGGATCTCTCGAAGGACATGAAGGACT 590 Query 61166 GGGAG-CGTTTAT--CGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 |||| |||| | |||||| | | || ||||| || ||| | || ||||||| Sbjct 589 GGGAATCGTTGAAGCCGAGCG---AGCGTCACTTCATCTCGCACGTGCTCGCATTCTTTG 533 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 |||||||||| || ||||| || ||||| | |||| || ||| ||||||||||| | Sbjct 532 CCGCTTCGGATGGCATCGTAAACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGG 473 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | |||| || || || |||||||| |||||| | || ||||| || |||||| || | Sbjct 472 TTACGGAAGCCCGCTGCTTCTACGGTTTCCAGGTCGCGATGGAAAACGTCCACAGTGAAA 413 Query 61343 TGTACAGTGTTCTCATCGATACGTACAT 61370 ||||| | || ||||||||||| || Sbjct 412 TGTACTCACTGCTGATCGATACGTATAT 385 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 |||| || || ||||||||| ||||| ||||| ||| || |||||||| | || | Sbjct 281 TGTTTAACGCGATCGAGACGCTACCGTGCGTGAAAAAGAAGGCCGATTGGGCTCTGAACT 222 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| | || | | ||| | ||||||||||| | | || || || | || |||| Sbjct 221 GGATCTCAAGCAAGAAGGCCAACTTTGGTGAACGGGTTGTTGCCTTCGCTGCCGTGGAGG 162 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 || | |||||||| || ||||| || || || ||| | ||||| || || | |||| Sbjct 161 GTATCTTTTTCAGCGGTAGTTTTGCGGCCATTTTCTGGCTTAAGAAGCGCGGCTTGATGC 102 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG 61636 | || || || ||| || ||| |||| || |||||||| || |||| || || |||| Sbjct 101 CAGGACTCACGTTCTCGAACGAGCTGATCTCGCGCGACGAAGGACTGCACTGCGACTTTG 42 Query 61637 C 61637 | Sbjct 41 C 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397320654062720