Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2924 114 2e-23 seq3048 113 7e-23 seq2196 109 8e-22 seq6500 78.8 1e-12 seq2237 78.8 1e-12 >seq2924 Length=1091 Score = 114 bits (126), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| ||||| || |||||||| || ||| Sbjct 180 GTACAAAGGGCAGGGACGTAATCAACGCTGGCTA-ATGACCAGCACTTACTAG-AAGTTC 237 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 | ||| | | || |||||||| ||||| | | | ||| |||| | |||| Sbjct 238 CGAGTTCAT-ATGGACCATTGCAATCCATAATCCCTACTAAG-TGAGCATTTGAGTGATT 295 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| |||| ||| || | || | || |||| ||||||||||||| Sbjct 296 TCCCGTTCCTCTCGGAATAGGAGACACGCT-GCTGCCCACAT---TGTAGCGCGCGTGTA 351 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||| |||||||||| | ||| Sbjct 352 GCCCAGAACATCTAAGGGCATCACGGACCTGTTATCGTCTC 392 >seq3048 Length=1162 Score = 113 bits (124), Expect = 7e-23 Identities = 161/218 (74%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| ||||| || |||||||| || ||| Sbjct 1153 GTACAAAGGGCAGGGACGTAATCAACGCTGGCTA-ATGACCAGCACTTACTAG-AAGTTC 1096 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 | ||| | | || |||||||| ||||| | | | ||| |||| | |||| Sbjct 1095 CGAGTTCAT-ATGGACCATTGCAATCCATAATCCCTACTAAG-TGAGCATTTGAGTGATT 1038 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| |||| ||| || | || | || |||| ||||||||||||| Sbjct 1037 TCCCGTTCCTCTCGGAATAGGAGACACGCT-GCTGCCCACAT---TGTAGCGCGCGTGTA 982 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||||| |||||||||| || Sbjct 981 GCCCAGAACATCTAAGGGCATCACGGACCTGTTATCGC 944 >seq2196 Length=1297 Score = 109 bits (120), Expect = 8e-22 Identities = 160/218 (73%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| ||||| || |||||||| || ||| Sbjct 131 GTACAAAGGGCAGGGACGTAATCAACGCTGGCTA-ATGACCAGCACTTACTAG-AAGTTC 188 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 | ||| | | || |||||||| ||||| | | | ||| |||| | |||| Sbjct 189 CGAGTTCAT-ATGGACCATTGCAATCCATAATCCCTACTAAG-TGAGCATTTGAGTGATT 246 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| |||| ||| || | || | || |||| ||||||||||||| Sbjct 247 TCCCGTTCCTCTCGGAATAGGAGACACGCT-GCTGCCCACAT---TGTAGCGCGCGTGTA 302 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||| |||||||||| |||||||||| || Sbjct 303 GCCCAGAACATCTGAGGGCATCACGGACCTGTTATCGC 340 >seq6500 Length=1050 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||||||||||||| |||||||||||||||||||||||| |||||||||| || Sbjct 986 CATTGTAGCGCGCGTGTAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCGC 931 >seq2237 Length=1108 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 || ||||||||||||| |||||||||||||||||||||||| |||||||||| || Sbjct 26 CATTGTAGCGCGCGTGTAGCCCAGAACATCTAAGGGCATCACGGACCTGTTATCGC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751930122280