Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20stephensi_20[genbank_20GCA_5F000300775.2_202013-07-19] 23,371 sequences; 221,324,304 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq22572 246 5e-63 seq246 239 8e-61 seq17891 215 9e-54 seq1475 140 6e-31 >seq22572 Length=513 Score = 246 bits (272), Expect = 5e-63 Identities = 165/183 (90%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 27 CACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 85 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||| |||||| ||||| |||||| |||||||||||||||||| Sbjct 86 GAAAGGGTGAACAATCCTACGCTTGGGGAATTTTGCTTCACAATGATAGGAAGAGCCGAC 145 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 146 ATCGAAGGATCAAAAAGTCACGTCGCTATGAACGCTTGGCGACCACAAGCCAGTTATCCC 205 Query 212 TGT 214 ||| Sbjct 206 TGT 208 >seq246 Length=25075 Score = 239 bits (264), Expect = 8e-61 Identities = 164/184 (89%), Gaps = 1/184 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 20718 CACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 20660 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 | ||||||||||||| |||||| ||||| |||||| |||||||||||||||||| Sbjct 20659 GAAAGGGTGAACAATCCTACGCTTGGGGAATTTTGCTTCACAATGATAGGAAGAGCCGAC 20600 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| | Sbjct 20599 ATCGAAGGATCAAAAAGTCACGTCGCTATGAACGCTTGGCGACCATAAGCCAGTTATCTC 20540 Query 212 TGTG 215 |||| Sbjct 20539 TGTG 20536 >seq17891 Length=603 Score = 215 bits (238), Expect = 9e-54 Identities = 163/186 (88%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 36 AGTAGGGTAAAAC-TAA--CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||| | Sbjct 592 AGTAGGGTAAAACGTAAACCCTGTCTCACGACGGTCTAAACCCAGCTCACGT-CCCT-TG 535 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| |||||| ||||| |||||| ||||||||||||||||||| Sbjct 534 AAAGGGTGAACAATCCTACGCTTGGGGAATTTTGCTTCACAATGATAGGAAGAGCCGACA 475 Query 153 TCGAAGGATCA-AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 474 TCGAAGGATCAAAAAAGTCACGTCGCTATGAACGCTTGGCGACCACAAGCCAGTTATCCC 415 Query 212 TGTGGT 217 ||| || Sbjct 414 TGTAGT 409 >seq1475 Length=2781 Score = 140 bits (154), Expect = 6e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||| ||||| | |||||| |||| |||||| |||||||||||||||||||||| Sbjct 2777 GGGTGTACAATTCTACGCTTGGGGAATCTTGCTTCACAATGATAGGAAGAGCCGACATCG 2718 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 2717 AAGGATCTAAAAGTCACGTCGCTATGAACGCTTGGCGACCACAAGCCAGTTATCCCT 2661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854200318176