Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1556 300 6e-79 >seq1556 Length=1045 Score = 300 bits (332), Expect = 6e-79 Identities = 393/535 (73%), Gaps = 22/535 (4%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||||| |||| || | |||||||| || | | ||| | | | || ||||| Sbjct 527 TCGACTACGGATCTTA-TCACTCGCAGTCTGACTCCAGTGCTTTGATATAT-GGTATTCG 584 Query 61 GAGTTTGGTTGATTTCGGTAAGCT-TGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCC 119 ||||| ||| ||| |||| | || || ||||| | ||| ||| ||||||||||| Sbjct 585 CAGTTTATCTGAATTCAGTAACCCCTGACGGGCCCCTCGTCCAAACAGAGCTCTACCTCC 644 Query 120 GGGAAGAAACACGCGAC--GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGA 177 | | | ||| | ||| |||||| ||||||| |||||||||||||| | | Sbjct 645 ATTATCATCCTCGCACCAGGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCA 704 Query 178 AGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGG 237 |||| | |||| ||||||| ||| ||||| |||||||| || |||| ||| || |||| Sbjct 705 AGTTCGTTTGGAATTTCACCGCTACCCACAACTCATCCCCGCAATTTTTAACTTACGTGG 764 Query 238 GTTCGGTCCTCCA-CGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCG 296 ||||||||||||| ||| | ||||| |||||||||| ||||| ||| |||||| | Sbjct 765 GTTCGGTCCTCCAGTGCGCT-TTACCGCACCTTCAACCTGGTCATGGGTAGGTCACTTGG 823 Query 297 CTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC 356 ||||||||| ||| | |||| |||||| ||| |||||||||||||| ||||| | Sbjct 824 TTTCGGGTCTACATCAAACAACTCTCTCGCCCTCTTCAGACTCGCTTTCGCTCCGGCTCC 883 Query 357 --CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGC 414 | | |||||||||| | |||| ||||||| || ||||||| |||||||| Sbjct 884 GTCTTTTCTGACTTAACCTCGCTATTTAACG-TAACTCGCCGGTTCATTCTACAAAAGGC 942 Query 415 ACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTT 474 ||||| ||||| | | || || ||| ||| ||||||||||| ||||| Sbjct 943 ACGCCATCACC-----CTTTAATGG-------GCTTTGACTACTTGTAGGCACACGGTTT 990 Query 475 CAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||| || ||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 991 CAGGTTCTCTTTCACTCCCCTTCCGGGGTTCTTTTCACCTTTCCCTCACGGTACT 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817555814144