Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1556 167 6e-39 >seq1556 Length=1045 Score = 167 bits (184), Expect = 6e-39 Identities = 223/295 (76%), Gaps = 14/295 (5%) Strand=Plus/Plus Query 42 GTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATC 101 || |||||||||||||||| | ||||| ||||| ||||||| ||| || ||| || Sbjct 761 GTGGGTTCGGTCCTCCAGTGCGCT-TTACCGCACCTT-CAACCTGGTCATGGG-TAGGTC 817 Query 102 GCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGC 160 | ||||| |||||||| || | | ||| |||||| | ||||||||||| ||| Sbjct 818 ACTTGGTTT-CGGGTCTACATCAAA-CAACTCTCTCGCCCTCTTCAGACTCGCTTT-CGC 874 Query 161 TACGCCTCCC-CTATTCGG--TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTAT 217 | || |||| || ||| | |||| || || | | || ||| |||| | |||| | Sbjct 875 TCCGGCTCCGTCTTTTCTGACTTAACCTC-GCTATTTAACGTAACTCGCCGGTTCATTCT 933 Query 218 ACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTC 277 |||||||| |||| |||||| || |||||| ||| |||||| ||| |||||||| Sbjct 934 ACAAAAGGCACGCCATCACCCTTTAA--TGGGCTTTGACTACTTGTAGGCACACGGTTTC 991 Query 278 AGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 332 ||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 992 AGGTTCTCTTTCACTCCCCT-TCCGGGGTTCTTTTCACCTTTCCCTCACGGTACT 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241569816704