Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1431 205 3e-50 seq757 147 7e-33 seq446 118 3e-24 seq1895 107 6e-21 >seq1431 Length=1469 Score = 205 bits (226), Expect = 3e-50 Identities = 208/271 (77%), Gaps = 24/271 (9%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || ||| |||||||||||| | |||||||||||||||| ||| | || ||||||| Sbjct 1036 GAATAAATAAAAAAACGATGAAAGTAGTGGTATTTCACTGGCGATGTTACCATCTCCCAC 977 Query 244 TTA-------TTCT------ACACCTCTCAAGTCATTTCACAAAGTCGGACTAG------ 284 ||| |||| |||| ||||| ||| | |||| || | | || Sbjct 976 TTACGTCTTATTCTTACGTTACACTTCTCACGTCTCCTTACAATGTTAGTCAAGCTTACA 917 Query 285 ---AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 |||||||||||||| | |||||||||| |||| ||| ||||||||||||||||| Sbjct 916 GTTAGTCAAGCTCAACAAG-TCTTCTTTCCTCGCTAATTTTTTCAAGCCCGTTCCCTTGG 858 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 | |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| || Sbjct 857 CAGTGGTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATCTTGTTAATCCATTCATGAGC 798 Query 402 GTCACTAATTAGATGACGAGGCATTTGGCTA 432 | |||||||||||||||| ||||||| ||| Sbjct 797 ATTACTAATTAGATGACGAAGCATTTGACTA 767 >seq757 Length=297689 Score = 147 bits (162), Expect = 7e-33 Identities = 84/86 (98%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 226670 GTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCAC 226729 Query 407 TAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||| Sbjct 226730 TAATTAGATGACGAGGCATTTGGCTA 226755 >seq446 Length=3012682 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 2057324 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 2057265 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 2057264 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 2057205 >seq1895 Length=9468 Score = 107 bits (118), Expect = 6e-21 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| |||||| | | | ||| | |||| | | || |||||||||| ||||||||| Sbjct 6984 ACTTATACTACACTTTTTATGTCTCCTTACAATGCCAGATTAGAGTCAAGTTCAACAGGG 7043 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||| | ||| |||||||||||||||||| || |||||||| || ||| Sbjct 7044 TCTTCTTTCCGAATTAATTTTTTCAAGCCCGTTCCCTTGGCAGTAGTTTCGCTCGAAAGT 7103 Query 362 AGATAGG 368 ||||||| Sbjct 7104 AGATAGG 7110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635160248288