Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq613 105 5e-18 >seq613 Length=358256 Score = 105 bits (116), Expect = 5e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||||| ||||||| || ||||| || || || ||||| ||||| || || ||||||| Sbjct 260198 GTGAAAAACATTTTATATCTCATGTCTTAGCATTTTTTGCAGCTTCTGATGGAATCGTCA 260139 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||||| | | ||||| || || || || ||| | | ||||| |||||||| | Sbjct 260138 ATGAGAATCTTGTTGAACGATTTAGTCAAGAAGTACAAATAACAGAGGCACGTTGTTTTT 260079 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 | || || || |||||||||| ||||| || || || ||||| Sbjct 260078 ATGGTTTTCAAGTTGCCATGGAAAATGTTCATTCAGAAATGTA 260036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 ||||| ||||||| || |||||||| | | | || ||||| ||| |||||| | Sbjct 259878 AAAGCTCATTGGGCGTTAAATTGGATAAACCATGAAAGTGCTACTTTTCCTGAACGTGTA 259819 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTTG 61553 | || ||||| | || || ||| | || || ||||| | |||| ||||| || || || Sbjct 259818 GTTGCTTTTGCTGCAGTAGAAGGTATTTTCTTTAGTGG-TAGTTTCGCCGCTATTTTCTG 259760 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 ||| || || | || |||||||| || || || |||||||||||| | || || | || Sbjct 259759 GTTAAAAAAGAGAGGTCTTATGCCAGGACTTACATTCAGCAATGAGCTTATTTCTAGAGA 259700 Query 61614 CGAGGGCA-TGCAT 61626 |||| || ||||| Sbjct 259699 TGAGGTCAGTGCAT 259686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556220929840