Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20cerana_20[refseq_20GCF_5F001442555.1_202015-11-12] 2,431 sequences; 228,331,812 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq1654 125 5e-24 seq113 120 2e-22 >seq1654 Length=5440108 Score = 125 bits (138), Expect = 5e-24 Identities = 181/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 25994 ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAA 26053 |||| | ||| ||| |||| |||| || | |||||| ||||||||||||| | Sbjct 1110115 ATCCTGAATATGCTAGTTATGATGCAAGGTTGAATACATTTTCAACATGGCCAAAATTTA 1110056 Query 26054 TGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGAT- 26112 || | | || ||||||||| | || |||| ||||||| |||| ||||||| || ||| Sbjct 1110055 TGCTACAAACAAAAGAACAATTAGCAGATGCTGGTTTTTATTATACAGGAAAAGGTGATC 1109996 Query 26113 AAAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCA 26172 ||| ||| ||||||| | ||||| || | |||| ||| ||| | | || |||| Sbjct 1109995 AAACTAT-ATGTTATTATTGTGGATGTGGTTTAAAAGATTGGGAACGAGAAGATAATCCT 1109937 Query 26173 TGGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAA 26232 ||| || |||||||||| | | | || |||| ||| |||| | ||||||||||| Sbjct 1109936 TGGGAACAACATGCAAAATGGTTTTCTAAATGTTATTATTTATTAATGATTAAAGGACAA 1109877 Query 26233 GATTATATAAATA 26245 |||||| | |||| Sbjct 1109876 GATTATGTGAATA 1109864 >seq113 Length=3423559 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| ||||| ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 2808237 GATGATGCAAGAATGTGTAAAATTTGTTATAATGGAGAATTAGGAGTAGTATTTTTACCA 2808178 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| | |||||||| || || ||||| ||| |||| || Sbjct 2808177 TGTGGACATATGGTTGCGTGTGTAAAATGTGCTCCTGGTATGATATCCTGTGCAGTATGC 2808118 Query 26491 CGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | |||| || | |||| | ||||| | || || ||||| Sbjct 2808117 AGAGAACCTGTTACAATGACTGTACGAGCTTTTTTCTCATA 2808077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356514236950074