Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20dorsata_20[refseq_20GCF_5F000469605.1_202013-09-24] 4,040 sequences; 230,340,171 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq628 123 2e-23 seq623 118 8e-22 >seq628 Length=409123 Score = 123 bits (136), Expect = 2e-23 Identities = 183/257 (71%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 25994 ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAA 26053 |||| | ||| ||| |||| | ||||||| |||||| ||||||||||||| | | Sbjct 268308 ATCCTGAATATGCTAGTTATGATGCTAGATTAAACACATTTTCAACATGGCCAAAATCTA 268367 Query 26054 TGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGAT- 26112 || | || ||||||||| | || |||| ||||||| |||| | ||||| || ||| Sbjct 268368 TGCCACAAACAAAAGAACAATTAGCAGATGCAGGTTTTTATTATACGGGAAAAGGTGATC 268427 Query 26113 AAAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCA 26172 ||| || |||||||||| ||||| || | |||| ||| ||| | | || |||| Sbjct 268428 AAACTA-TATGTTATCATTGTGGATGTGGTTTAAAAGATTGGGAACCAGAAGATAATCCT 268486 Query 26173 TGGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAA 26232 ||| || ||||||||| | | | || || | ||| |||| |||||||||||| Sbjct 268487 TGGGAACAACATGCAAAGTGGTTTTCTAAGTGCTATTATTTATTAACAGTTAAAGGACAA 268546 Query 26233 GATTATATAAATAGAAT 26249 |||||| | |||| ||| Sbjct 268547 GATTATGTGAATAAAAT 268563 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| ||||| ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 268897 GATGATGCAAGAATGTGTAAAATTTGTTATAATGGAGAATTAGGAGTAGTATTTTTACCA 268956 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| | |||||||| || || ||||| ||| |||| || Sbjct 268957 TGTGGACATATGGTTGCGTGTGTAAAATGTGCTCCTGGCATGATATCCTGTGCAGTATGC 269016 Query 26491 CGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | |||| || | |||| | ||||| | || || ||||| Sbjct 269017 AGAGAACCTGTTACAATGACTGTACGAGCCTTTTTCTCATA 269057 >seq623 Length=301109 Score = 118 bits (130), Expect = 8e-22 Identities = 141/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 25598 TTGCAAAAGCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTA 25657 ||||| |||||||| ||||||| |||||| ||||| |||| ||||||||||||| Sbjct 25522 TTGCAGCTGCTGGATTTTATTATACGGGTGAATGTGATAAAGTTAGATGTTTTGAATGTC 25581 Query 25658 ACGTTACTATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGG 25716 | ||| | |||| |||||| | ||| |||| || | | |||| | |||||| Sbjct 25582 AAGTTGAGA-TATGTCAATGGGTACAAGGTGATATTCCAATGGTTGATCATCAGAGATGG 25640 Query 25717 TCTGCAAGATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGAT 25776 || ||||||||| |||||||| | ||||| |||||| ||||| ||||| || || ||| Sbjct 25641 TCAGCAAGATGTAGATTTATTTGTAAAATAAATTGTGGTAATGTACCAATTGGAATAGAT 25700 Query 25777 CCAAATACA 25785 | |||||| Sbjct 25701 GCTAATACA 25709 Score = 118 bits (130), Expect = 8e-22 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 25994 ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAA 26053 |||| | ||| ||| |||| |||| |||| |||||| ||||||||||||| | Sbjct 25843 ATCCTGAATATGCTAGTTATGATGCAAGGTTAAACACATTTTCAACATGGCCAAAATTTA 25902 Query 26054 TGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGAT- 26112 || | | || ||||||||| | || |||| ||||||| |||| |||||| || ||| Sbjct 25903 TGCTACAAACAAAAGAACAATTAGCAGATGCAGGTTTTTATTATATAGGAAAAGGTGATC 25962 Query 26113 AAAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCA 26172 ||| || |||||||| | ||||| || | |||| ||| ||| ||| || |||| Sbjct 25963 AAACTA-TATGTTATTATTGTGGATGTGGTTTAAAAGATTGGGAACCACAAGATAATCCT 26021 Query 26173 TGGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAA 26232 ||| | |||||| ||| | | | || |||| ||| |||| | ||||||||||| Sbjct 26022 TGGGAGCAACATGCGAAATGGTTTTCTAAATGTTACTATTTATTAATGATTAAAGGACAA 26081 Query 26233 GATTATATAAAT 26244 |||||| | ||| Sbjct 26082 GATTATGTGAAT 26093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| | |||||||||||||||||||||||||||| | | || ||||||||||| Sbjct 26368 GATGATGCAAAAATATGTAAAATTTGTTATAATGAAGAATTAGAAGTAGTATTTTTACCA 26427 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGC 26462 ||||| ||| | | || ||| | |||||||| Sbjct 26428 TGTGGACATGTGATCGCTTGTGTAAAATGTGC 26459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356507245610160