Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq297 168 9e-40 >seq297 Length=3220 Score = 168 bits (186), Expect = 9e-40 Identities = 187/248 (75%), Gaps = 21/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| ||| ||| | | ||| ||| Sbjct 1239 CTTAACCTTCCAGCACCGGGCAGGTGTCAGCCCCTATACGTCGTCTTTC-GACTTTGCAG 1297 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||| | || |||||| ||||| ||| Sbjct 1298 AGACCTGTGTTTTTGATAAACAGTTGTTTGGGCCTATTCACTGCG----------GCT-- 1345 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | || || | ||| |||||||||||||||||||||||||| |||||||||| Sbjct 1346 ----GGCTTTTAC-ACCAG---CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 1397 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| | || | ||||||| ||||| || ||| |||||||||||| Sbjct 1398 TTCCTTAACGAGAGTTCTCTCGCTCACCTTAGTGTTCTCCACTCGACTACCTGTGTCGGT 1457 Query 241 TTACGGTA 248 || ||||| Sbjct 1458 TTGCGGTA 1465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694346547258