Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2812 334 1e-89 seq327 149 1e-33 seq297 87.8 3e-15 seq1250 82.4 1e-13 >seq2812 Length=11703 Score = 334 bits (370), Expect = 1e-89 Identities = 246/283 (87%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 7946 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 8005 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 8006 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 8065 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8066 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 8125 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 8126 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 8185 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 8186 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 8226 >seq327 Length=86727 Score = 149 bits (164), Expect = 1e-33 Identities = 175/239 (73%), Gaps = 31/239 (13%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||| ||| | ||||| |||| | | |||||||||||| |||||||||| ||||| Sbjct 68655 TACTGAGCAGGATTACTATTGCAACTA--GTCATCAGTAGGATAAAACTAACTCATCTCA 68598 Query 61 TG--------ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 | |||||||||||||| |||||||||||| ||| |||||| ||| Sbjct 68597 CGGTTCATCAACGGTCTAAACCCAACTCACGTTCCCTGTTA--------ACAATCGGACG 68546 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| ||||| ||||| | ||||||||||||| ||||||| ||||||||| || Sbjct 68545 CTTGGCGAATATTGCTTTGCAATGATAGGAAGAGGTAACATCGA----TCAAAAAGCGAC 68490 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 |||||| ||| ||||||||| | ||||||||||||||||||||||| ||| Sbjct 68489 GTCGCT---------TGGTCGCCACAAGCTAATTATCCCTGTGGTAACTTTTCTGACAC 68440 >seq297 Length=3220 Score = 87.8 bits (96), Expect = 3e-15 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 491 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACC 550 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| | ||| || | | ||| || ||||||||||||| | |||| | Sbjct 551 CTTGGGACCTACTTCAGCCCCAGGATGC---GACGAGCCGACATCGAGGTGCCAAACCTC 607 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||||| ||||| | | ||||| |||||||| |||| ||||| Sbjct 608 CCCGTCGATGTGAACTCTTGGGGGAGATAAGCCTGTTATCCCCAGGGTAGCTTTT 662 >seq1250 Length=853450 Score = 82.4 bits (90), Expect = 1e-13 Identities = 96/129 (74%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| || | || ||||| | |||| | |||| | ||| || ||| ||| ||| || Sbjct 833489 TTAGCGGATAAATAATCCGATGCTTGGCAAATTTT---TCGCAATAATAAGAAAAGCTGA 833545 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||||||||||| | ||||||||||| |||| | || || |||||||||| Sbjct 833546 CATCAAAGGATCAAAAAGCGATGTCGCTATGAATGCTTAGTCATCAAAATCCAGTTATCC 833605 Query 211 CTGTGGTAA 219 | || ||| Sbjct 833606 TTATGATAA 833614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854332109376