Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2812 479 9e-133 seq2792 253 7e-65 seq327 205 3e-50 seq1250 132 2e-28 seq3332 91.5 5e-16 >seq2812 Length=11703 Score = 479 bits (530), Expect = 9e-133 Identities = 317/350 (91%), Gaps = 1/350 (0%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || |||||||| ||||||| | ||||||||||||||| ||| | || ||||||| Sbjct 8508 GAGTAAGTAAAGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTACCATCTCCCAC 8567 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | |||| | | ||||||||||||||||||||||||| Sbjct 8568 TTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACAGGGTC 8627 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 8628 TTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAG 8687 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8688 ATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 8747 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATT 483 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 8748 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTTTTTGAATT 8807 Query 484 TCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 8808 TCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 8857 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 8273 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 8332 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 8333 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 8392 >seq2792 Length=44945 Score = 253 bits (280), Expect = 7e-65 Identities = 208/249 (84%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || |||||||| ||||||| | |||||| |||||||| ||| | || |||| || Sbjct 10109 GAGTAAGTAAAGAAACGATGAAAGTAGTGATATTTCACCGGCGATGTTACCATCTCCTAC 10168 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | |||| | | |||||||| ||||| |||||| Sbjct 10169 TTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAG-----CTCAAAAGGGTC 10223 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 10224 TTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAG 10283 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||| Sbjct 10284 ATAGGGACAGAGGGAATCT-GTT-ATCCACTCATGCGCGTCACTAATTAGATGACGAGGC 10341 Query 424 ATTTGGCTA 432 ||||||||| Sbjct 10342 ATTTGGCTA 10350 Score = 233 bits (258), Expect = 6e-59 Identities = 144/154 (94%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct 6914 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGCCCGTTTCCT 6973 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 6974 TGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATG 7033 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||| |||||||| || Sbjct 7034 CGCGTCACTAATTAGATGACGAAGCATTTGGTTA 7067 Score = 149 bits (164), Expect = 2e-33 Identities = 102/115 (89%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||| |||| ||||||||||||||||| || |||||||||||||| || Sbjct 34559 GAGGCATTTGATTACCA----AGAGTCATAGTTACTCCTGCTGTTTACCCGCGCTTTTTT 34504 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 34503 GAATTTCTTCACGTTGATATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 34449 >seq327 Length=86727 Score = 205 bits (226), Expect = 3e-50 Identities = 197/249 (79%), Gaps = 14/249 (6%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCAC 243 || ||| |||| |||| || | ||| ||||||||| ||| | | | ||||||| Sbjct 68130 GAGTAAATAAAGAAACAATGAAAGTAAAGGTATTTCATCGGCGATGTTATCATCTCCCAC 68071 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||| ||| ||| || || | | ||||||| ||||||||||||||||| Sbjct 68070 TTATGCTACACCTGTCATGTCTCTT-ACCATGCTAGACTAGAATCAAGCTCAACAGGGTC 68012 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||| || ||||||| |||||||||| |||||||||||||| ||||| Sbjct 68011 TTCTTTCCCCGCTG-TTGTTCCAAGCCTGTTCCCTTGGTAGTGGTTTCGCTAGAAAGTAG 67953 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 |||||||||| | |||||||||||||||||||||||||| ||| ||||||| Sbjct 67952 ATAGGGACAGAG----------TAATCCATTCATGCGCGTCACTAATT-GATAACGAGGC 67904 Query 424 ATTTGGCTA 432 ||||||||| Sbjct 67903 ATTTGGCTA 67895 Score = 87.8 bits (96), Expect = 6e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||| | |||||| ||||||| |||||||||||||| ||||||||| ||| ||| Sbjct 83189 TAGGGACAGAGAGAATCTTGTTAATCTATTCATGCGCGTCATTAATTAGATAACGGAGCA 83130 Query 425 TTTGGCTA 432 |||||||| Sbjct 83129 TTTGGCTA 83122 >seq1250 Length=853450 Score = 132 bits (146), Expect = 2e-28 Identities = 146/193 (76%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| ||| | || | | ||| | | | || ||||||||||||| | |||| | Sbjct 833876 CACTTATACTATAGCTTTTATGTCTTCTTATAATACTAGACTAGAGTCAAGTTTAACAAG 833935 Query 301 G-TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | |||||| ||| ||| |||| ||||||| |||| ||||| || ||||| ||||| | Sbjct 833936 GATCTTCTCTCCTTGCTAATTCTTCCAAGCCTATTCCTTTGGCAGTAGTTTCCCTAGAAA 833995 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 || |||| || || |||||||| ||||||||||||| | | | | ||||||||||||| Sbjct 833996 ATAAATAGAGATAGAGGGAATCTTATTAATCCATTCATACACATTATTAATTAGATGACG 834055 Query 420 AGGCATTTGGCTA 432 | ||||| |||| Sbjct 834056 AAACATTTAGCTA 834068 >seq3332 Length=1249 Score = 91.5 bits (100), Expect = 5e-16 Identities = 82/104 (79%), Gaps = 8/104 (8%) Strand=Plus/Minus Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTAC--------CCGCGCTTGGTTGAATTTCTTCA 489 ||||||||||| || || |||| |||||| | ||| || ||||||||||||| Sbjct 1240 AGAGAGTCATAATTGCTTCCGCTGTTTACTGCTTTTACTGCGTTTTCTTGAATTTCTTCA 1181 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 | ||||||||||| |||| | ||| |||||||| |||||||||| Sbjct 1180 CATTGACATTCAGGGCACAGAGCAAAAATCACAATGCGTCAACA 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635070067008