Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1272 120 9e-23 >seq1272 Length=2048 Score = 120 bits (132), Expect = 9e-23 Identities = 173/238 (73%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 2696 AAGTT-AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGC--GAAAG 2752 ||||| ||||||||||||||| | ||||||||||| || ||||| | | | ||| Sbjct 848 AAGTTGAACCAAATCGGTACTGTTACTGAAACTTTGGAAACTATCCGTCTTTCACGTAAG 789 Query 2753 AAGCTGGATACA-CAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATC 2811 || ||| |||| || || | | || ||||||||||||||||||| || || ||| Sbjct 788 AA--TGGCTACAACACCATGATT-TCTCACCGTTCAGGTGAAACTGGTGACACATTCATC 732 Query 2812 GCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACT 2871 ||||| |||| ||||| ||||| ||||||| ||||||| ||| | | ||| | Sbjct 731 GCTGACTTTGCTGTTGCTGTTAACGGTGGTCAACTTAAGACTGGTGCCCCAGCTCGTTCA 672 Query 2872 GACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTTG 2929 || ||| ||| || ||||||| || ||| |||||||| |||| ||||||| || Sbjct 671 GAACGTGTTGAAAAGTACAACCGTTTACTTGAAATCGAAGAAGAACTCGGTGAAGGTG 614 Score = 111 bits (122), Expect = 5e-20 Identities = 205/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 1777 GTTCCTTCAGGAGCATCAACTGGTGAACACGAAGCAGTAGAACTTCGTGATGGTGACAAA 1836 ||||| ||||| || |||||||||||| |||||||||| ||| | |||||||| | | Sbjct 1743 GTTCCATCAGGTGCTTCAACTGGTGAAAACGAAGCAGTTGAATTACGTGATGGCGGC--- 1687 Query 1837 GCTCGTTACGGTGGTCTTGGTACTCAAAAAGCAGTTGATAACGTAAACAACGTTATTGCT 1896 | ||| |||||| ||| || ||||||||| | || || || | |||||| Sbjct 1686 GACCGTGTTGGTGGTAAAGGTGTTC-TAAAGCAGTTAACAATGTTAATACTAAGATTGCT 1628 Query 1897 GAGCACATCATCGGATTCGACGTACGTGATCAACAAGGTATTGACCGCGCAATGATCGCT 1956 || | | ||||| ||| || || ||| ||| ||||| | ||||||| Sbjct 1627 GAAGCTTTAAAGGGATTAGACCCACACGACCAAGCTAATATCGACCGTGTTATGATCGAA 1568 Query 1957 CTTGACGGTACTCCAAACAAAGGTAAACTTGGTGCCAACGCTATTCTTGGTGTGTCTATC 2016 | || ||||| |||||||| | | |||||||||| || || ||| | |||||||| || Sbjct 1567 TTAGATGGTACACCAAACAAGGCTGAACTTGGTGCTAATGCCATTTTAGGTGTGTCAATG 1508 Query 2017 GCTGTAGCACGCGCAGCTGCTGACTACCTTGAAGTTCCACTTTACAGCTACCTTGGCGG 2075 ||| || ||||||||| | || | | || | ||||| ||||||||||| Sbjct 1507 GCTACTGCTGATGCAGCTGCTAAAGACAGTCACCAACCTTTGTACAGATACCTTGGCGG 1449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156023676411624