Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20florea_20[refseq_20GCF_5F000184785.2_202012-12-07] 7,946 sequences; 230,485,475 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq2440 127 1e-24 seq600 87.8 1e-12 >seq2440 Length=2833704 Score = 127 bits (140), Expect = 1e-24 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 26012 ATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAATGATGCGAATTAAAGAAC 26071 |||| | ||| ||| |||||| ||||||||||||| | ||| | || ||||||| Sbjct 836349 ATGATGCTAGACTAAACACATTTTCAACATGGCCAAAATCTATGCCACAAACAAAAGAAC 836408 Query 26072 AACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGAT-AAAGTATTATGTTATCAA 26130 || | || |||| ||||||| |||| ||||||| || ||| ||| || |||||||||| Sbjct 836409 AATTAGCAGATGCAGGTTTTTATTATACAGGAAAAGGTGATCAAACTA-TATGTTATCAT 836467 Query 26131 TGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCATGGATACGACATGCAAAA 26190 ||||| || | |||| ||| ||| | | || |||| ||| || ||||||||| Sbjct 836468 TGTGGATGTGGTTTAAAAGATTGGGAACCAGAAGATAATCCTTGGGAACAACATGCAAAG 836527 Query 26191 GAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAAGATTATATAAATAGAAT 26249 | | | || |||| ||| |||| |||||||||||||||||| | |||| ||| Sbjct 836528 TGGTTTTCTAAGTGTTATTATTTATTAACAGTTAAAGGACAAGATTATGTGAATAAAAT 836586 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| ||||| ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 836917 GATGATGCAAGAATGTGTAAAATTTGTTATAATGGAGAATTAGGAGTAGTATTTTTACCA 836976 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| | |||||||| || || ||||| ||| |||| || Sbjct 836977 TGTGGACATATGGTTGCGTGTGTAAAATGTGCTCCTGGTATGATATCCTGTGCAGTATGC 837036 Query 26491 CGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | |||| || | |||| | ||||| | || || ||||| Sbjct 837037 AGAGAACCTGTTACAATGACTGTACGAGCCTTTTTCTCATA 837077 >seq600 Length=4716229 Score = 87.8 bits (96), Expect = 1e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 25598 TTGCAAAAGCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTA 25657 ||||| |||||||| ||||||| |||||| ||||| |||| ||||||||||||| Sbjct 267308 TTGCAGCTGCTGGATTTTATTATACGGGTGAATGTGATAAAGTTAGATGTTTTGAATGTC 267249 Query 25658 ACGTTACTATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGG 25716 | ||| | |||| |||||| || |||| || | | |||| | | |||| Sbjct 267248 AAGTTGAGA-TATGTCAATGGGTGCGAGGTGATATTCCAATGGTTGATCATGAGAAATGG 267190 Query 25717 TCTGCAAGATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAG 25768 || |||| ||| |||||||| | ||||| |||||| ||||| ||||||| Sbjct 267189 TCAGCAAAGTGTAGATTTATTTGTAAAATAAATTGTGGTAATGTACCAATAG 267138 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 26012 ATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAATGATGCGAATTAAAGAAC 26071 |||| |||| ||| |||||| ||||||||||| | | | | || || |||| Sbjct 266972 ATGATGCAAGGCTAAACACATTTTCAACATGGCCAAGCTTCAAGCTACAAACAAAGGAAC 266913 Query 26072 AACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGATAAAGTATTATGTTATCAAT 26131 || | || |||| ||||||| |||| ||||||| | ||| || |||||||| | | Sbjct 266912 AATTAGCAGATGCAGGTTTTTATTATACAGGAAAAGATGATCAAACCATATGTTATTATT 266853 Query 26132 GTG---GTGGTTCTATAAATAATTTTGAATTACATGACGATCCATGGATACGACATGCAA 26188 ||| |||||| ||| | | ||| | | || | || ||| || |||||||| Sbjct 266852 GTGCATGTGGTT---TAAGAGACTGGGAACCAGAAGATAAACCTTGGGAACAACATGCAA 266796 Query 26189 AAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAAGATTATATAAATAGAA 26248 | | ||| || |||| ||| | || | |||||||||||||||||| | |||| || Sbjct 266795 AGTGGTTTCCTAAATGTTATTATTTGTTAATGGTTAAAGGACAAGATTATGTGAATAAAA 266736 Query 26249 T 26249 | Sbjct 266735 T 266735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356490273469884