Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_010179.2 Length=40881 Score E Sequences producing significant alignments: (Bits) Value seq3316 95.1 3e-15 >seq3316 Length=958 Score = 95.1 bits (104), Expect = 3e-15 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 16857 TATTCGTGGTATGACTTCTTACGGTGCTTACATTAACGAAGCATCACTAGCAACGCATGA 16916 ||||||||||||||| | || ||||||||||| || ||||| ||||| || | || || Sbjct 165 TATTCGTGGTATGACAGCCTATGGTGCTTACATCAATGAAGCGTCACTTGCTAATCAAGA 224 Query 16917 AGTTTTTCAAGAAATTGTACAGCGTTGTTCTGTT--GGATCAGCAAGAATTATCTGTGAC 16974 ||| ||| | ||||| | |||||||||||| | ||| || |||||||| || || Sbjct 225 AGTATTTGATGAAATACAAAAGCGTTGTTCTGGTAAGGA--CGCTAGAATTATTTGCGAT 282 Query 16975 ACAAACCCTGATATTCCTACACA 16997 || ||||| || | || ||||| Sbjct 283 ACCAACCCGGACGTACCAACACA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130689341627086