Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apis_20mellifera_20[refseq_20GCF_5F000002195.4_202011-01-14] 5,321 sequences; 250,287,000 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq1 123 2e-23 >seq2 Length=15549267 Score = 123 bits (136), Expect = 2e-23 Identities = 192/269 (71%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 25979 CTAAAAAATCATATT-ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAA 26037 |||||||| | ||| |||| | ||| ||| |||| |||| || | |||||| | Sbjct 9256054 CTAAAAAACC-TATACATCCTGAATATGCTAGTTATGATGCAAGGTTGAATACATTTTCA 9255996 Query 26038 ACATGGCCAAAAGCAATGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttAT 26097 || ||||||||| ||| | | || ||||||||| | || |||| ||||||| |||| Sbjct 9255995 ACTTGGCCAAAATTTATGTTACAAACAAAAGAACAATTAGCAGATGCAGGTTTTTATTAT 9255936 Query 26098 TCAGGAAATGGAGAT-AAAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGA 26156 ||||||| | ||| ||| ||| ||||||| | ||||| || | |||| ||| || Sbjct 9255935 ACAGGAAAAAGTGATCAAACTAT-ATGTTATTATTGTGGATGTGGTTTAAAAGATTGGGA 9255877 Query 26157 ATTACATGACGATCCATGGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATT 26216 | | | || |||| ||| || |||||||||| ||| | || |||| ||| |||| Sbjct 9255876 ACCAGAAGATAATCCTTGGGAACAACATGCAAAATGGTATTCTAAATGTTATTATTTATT 9255817 Query 26217 TCTTGTTAAAGGACAAGATTATATAAATA 26245 | ||||||||||||||||| | |||| Sbjct 9255816 AATGATTAAAGGACAAGATTATGTGAATA 9255788 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 25567 TGGCCTTTAATATTTTTAAAAGCTGACCTTTTTGCAAAAGCTGGATTGTATTATATTGGT 25626 |||||| || || | ||||| |||| |||| |||||||| ||||||| ||| Sbjct 9256400 TGGCCTGTATCATATATAAAACCTGAAAAACTTGCCGCTGCTGGATTTTATTATACGGGT 9256341 Query 25627 GAAAATGATAGTGTTAAATGTTTTGAATGTAACGTTACTATTATG-AAATGGGAAGAAGA 25685 ||| |||||| |||| ||||||||||||| | ||| | |||| |||||| | ||| Sbjct 9256340 GAATATGATAAAGTTAGATGTTTTGAATGTCAAGTTGAGA-TATGTCAATGGGTACAAGG 9256282 Query 25686 TGATGAACCTTTAGCATGTCATAAAAGATGGTCTGCAAGATGTCGATTTATTAGAAAAAT 25745 |||| || | | |||| | |||||||| ||||||||| |||||||| | ||||| Sbjct 9256281 TGATATTCCAATGGTTGATCATCAGAGATGGTCAGCAAGATGTAGATTTATTTGTAAAAT 9256222 Query 25746 TGCTTGTGGAAATGTTCCAATAGGTATTGATCCAAATACA 25785 |||||| ||||| ||||| || || ||| | |||||| Sbjct 9256221 AAATTGTGGTAATGTACCAATTGGAATAGATTCTAATACA 9256182 >seq1 Length=29893408 Score = 123 bits (136), Expect = 2e-23 Identities = 183/257 (71%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 25994 ATCCAAATTATTCTACAAATGAATCAAGATTAATAACATTTGAAACATGGCCAAAAGCAA 26053 |||| | ||| ||| |||| | ||||||| |||||| ||||||||||||| | | Sbjct 17708961 ATCCTGAATATGCTAGTTATGATGCTAGATTAAACACATTTTCAACATGGCCAAAATCTA 17708902 Query 26054 TGATGCGAATTAAAGAACAACTTTCAAATGCGGGttttttttATTCAGGAAATGGAGAT- 26112 || | || ||||||||| | || |||| ||||||| |||| | ||||| || ||| Sbjct 17708901 TGCCACAAACAAAAGAACAATTAGCAGATGCAGGTTTTTATTATACGGGAAAAGGTGATC 17708842 Query 26113 AAAGTATTATGTTATCAATGTGGTGGTTCTATAAATAATTTTGAATTACATGACGATCCA 26172 ||| ||| ||||||||| ||||| || | |||| ||| ||| | | || |||| Sbjct 17708841 AAACTAT-ATGTTATCATTGTGGATGTGGTTTAAAAGATTGGGAACCAGAAGATAATCCT 17708783 Query 26173 TGGATACGACATGCAAAAGAATATCCAAATTGTTTATATGTATTTCTTGTTAAAGGACAA 26232 ||| || ||||||||| | | | || || | ||| |||| |||||||||||| Sbjct 17708782 TGGGAACAACATGCAAAGTGGTTTTCTAAGTGCTATTATTTATTAACAGTTAAAGGACAA 17708723 Query 26233 GATTATATAAATAGAAT 26249 |||||| | |||| ||| Sbjct 17708722 GATTATGTGAATAAAAT 17708706 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||||| ||||| ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 17708365 GATGATGCAAGAATGTGTAAAATTTGTTATAATGGAGAATTAGGAGTAGTATTTTTACCA 17708306 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| | |||||||| || || ||||| ||| |||| || Sbjct 17708305 TGTGGACATATGGTTGCGTGTGTAAAATGTGCTCCTGGTATGATATCCTGTGCAGTATGC 17708246 Query 26491 CGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531 | |||| || | |||| | ||||| | || || ||||| Sbjct 17708245 AGAGAACCTGTTACAATGACTGTACGAGCTTTTTTCTCATA 17708205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356501679478134