Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq30 219 6e-55 seq486 214 3e-53 seq157 214 3e-53 seq19 192 9e-47 seq84 183 5e-44 seq42 176 7e-42 >seq30 Length=102876 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 96171 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 96228 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 96229 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 96288 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 96289 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 96345 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 96346 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 96402 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 96403 AGCCGCCTGTCCCTCTAA 96420 Score = 205 bits (226), Expect = 1e-50 Identities = 207/258 (80%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 87195 GTACAAAGGGCAGAGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 87252 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 87253 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 87312 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| | || |||| || ||| | | ||||||||||||||||||| Sbjct 87313 ACCCGGGCCTTTCGGCCA--GAGA-AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 87369 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||||||||||||||| | |||||||||||||| ||||| || |||| | ||| | Sbjct 87370 GCCCAGAACATCTAAGGGCACCCCAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 87426 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 87427 AGCCACCTGTCCCTCTAA 87444 >seq486 Length=198290 Score = 214 bits (236), Expect = 3e-53 Identities = 209/259 (81%), Gaps = 13/259 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 14397 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 14454 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 14455 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 14514 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| | |||| || ||| | | ||||||||||||||||||| Sbjct 14515 ACCCGGGCCTTTCGGCCAGA---AAAGACACGCTGATTTCTTCAGTGTAGCGCGCGTGCG 14571 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 14572 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 14628 Query 239 AG--GCCATCTCCCTCGAA 255 || ||| | |||||| || Sbjct 14629 AGCAGCC-TGTCCCTCTAA 14646 >seq157 Length=387809 Score = 214 bits (236), Expect = 3e-53 Identities = 181/218 (83%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 70650 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 70593 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 70592 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 70533 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 70532 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 70476 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||||||||||||||||||| Sbjct 70475 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 70438 >seq19 Length=147286 Score = 192 bits (212), Expect = 9e-47 Identities = 176/218 (81%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||| |||||||||||||| |||||||||| | |||||||||| ||||| |||||| | Sbjct 103490 GTACAGAGGGCAGGGACGTAATCAACGCGAG--TAATGACTCGCGGTTACTGGGAATT-C 103434 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| ||||| | | |||| | || Sbjct 103433 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTCGCACGAAGCAGGTTCAGCGGGTT 103374 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 103373 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 103317 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||||||||||||||||||| Sbjct 103316 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 103279 >seq84 Length=41600 Score = 183 bits (202), Expect = 5e-44 Identities = 185/235 (79%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| | Sbjct 21312 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGAGAATT-C 21369 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||| | | | |||| | || Sbjct 21370 CTCGTTCATGGGAAATAATTGCAAGCCTTAATCCCTAGCACAAAGGAGGTTCAGCGGGTT 21429 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| | |||| | ||| | | | ||||||||||||||||| Sbjct 21430 ACCCGGGCCTTTCGGCCAGA---AAAGACAAGCTGATTCCTTGAGTGTAGCGCGCGTGCG 21486 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 234 || ||||||||||||| ||||||||||||||||||| ||||| ||| | |||| Sbjct 21487 GCTTAGAACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCTTGTGCGGCC 21540 >seq42 Length=78728 Score = 176 bits (194), Expect = 7e-42 Identities = 200/257 (78%), Gaps = 15/257 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 40841 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 40898 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | || || |||||||| || ||||| | ||| | | | || | | || Sbjct 40899 TTCGTTCATGAGGAATAATTGCAAGCCTCAATCCCTAGCACAAAGGAGGTTTAGCGGGTT 40958 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| ||| || ||| | || || ||| | |||||||||||||||||| Sbjct 40959 ACCCGGGCCTCTCGACC----TGAAAACACACGCTGATTCTTTCAGTGTAGCGCGCGTGC 41014 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 |||||||||| || |||| |||||||||||||||||| ||||| || |||| | ||| Sbjct 41015 GGCCCAGAACGACTGAGGGTATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAG 41071 Query 238 AAG--GCCATCTCCCTC 252 ||| ||| | |||||| Sbjct 41072 AAGCAGCC-TGTCCCTC 41087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996197230