Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq45 136 2e-29 seq30 136 2e-29 seq42 131 7e-28 seq56 118 4e-24 seq486 111 7e-22 seq157 98.7 4e-18 >seq45 Length=46566 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1410 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 1469 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 1470 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 1529 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1530 ATAGGGGCGA 1539 Score = 93.3 bits (102), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| | || | |||| | | ||||| ||||||| Sbjct 375 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTTGGTGCTAAACTCCATCTAAGGCTAAAT 434 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAA 148 | || ||| ||||||||| ||| ||||||| |||| ||||| |||||| Sbjct 435 A-TGACCACGAGACCGATGGCGAACAAGTACCGTGAGGGAAAGTTGAAAA 483 Score = 75.2 bits (82), Expect = 5e-11 Identities = 65/80 (81%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | |||||| ||||| | ||||| Sbjct 1230 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGAGACTCAAA 1289 Query 466 CCCGTGCGCGTAATGAAAGT 485 || ||| ||||||||| Sbjct 1290 CCTAAAGGCGCAATGAAAGT 1309 >seq30 Length=102876 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 93097 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 93038 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 93037 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 92978 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 92977 ATAGGGGCGA 92968 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| | || |||||| | | ||||| ||||||| Sbjct 93877 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 93818 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 93817 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 93759 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 93758 GAGAGAGTTCAAGAGTACGTGAAA 93735 Score = 75.2 bits (82), Expect = 5e-11 Identities = 65/80 (81%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG--TCAAA 465 ||||||||| |||||||||||||||||||||||| | |||||| ||||| | ||||| Sbjct 93277 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGAGACTCAAA 93218 Query 466 CCCGTGCGCGTAATGAAAGT 485 || ||| ||||||||| Sbjct 93217 CCTAAAGGCGCAATGAAAGT 93198 >seq42 Length=78728 Score = 131 bits (144), Expect = 7e-28 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| | || |||||| | | ||||| ||||||| Sbjct 15697 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 15638 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| ||||| | ||||| |||||| | Sbjct 15637 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTAAAAAGAACTTTGAA 15579 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 15578 GAGAGAGTTCAAGAGTACGTGAAA 15555 >seq56 Length=57696 Score = 118 bits (130), Expect = 4e-24 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||| || ||||||||||| | || |||||| | ||||| ||||||| Sbjct 12881 GAGTGGGGTTGCTTGAGAGTGCAGCTCTAAGTTGGTGGTAAACGCCATCTAAGGCTAAAT 12940 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || ||| |||||||||||| ||| ||| |||| ||||| ||||||| |||||| | Sbjct 12941 A-TGACCACAAGACCGATAGCGAACAGGTACTGTGAGGGAAAGTTGAAAAGAACTTTGAA 12999 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 13000 GAGAGAGTTCAAGAGTACGTGAAA 13023 Score = 95.1 bits (104), Expect = 5e-17 Identities = 99/130 (76%), Gaps = 5/130 (4%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| || Sbjct 13646 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTTAGG 13705 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||| | || |||| ||||| |||||| |||||| | ||||| Sbjct 13706 GGAAACCCTGATGGAAGTCCGTAGCGATTCTGACGTGCA-----ATCGTCGGAACTGGGT 13760 Query 674 ATAGGGGCGA 683 |||||||| Sbjct 13761 GGAGGGGCGA 13770 >seq486 Length=198290 Score = 111 bits (122), Expect = 7e-22 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||||| | | || |||| | ||| ||||| ||||||| Sbjct 6464 GAGTCGGGTTGATTGAGAGCGCAGCTCTCATTTGGTGGTAGACTTCATCTAAGGCTAAAT 6405 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| | || || || ||||||| ||||| | Sbjct 6404 AT-GACCACGAGACCGATAGCGAACAAGTACCGCGAGGGAGAGTTGAAAAGAACTTTAAA 6346 Query 159 AAGAGAGTTAAAAAGCACGTGAA 181 |||||||| || || ||||||| Sbjct 6345 GAGAGAGTTCAAGAGTACGTGAA 6323 >seq157 Length=387809 Score = 98.7 bits (108), Expect = 4e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||| |||||||||||||| ||||||||||| ||| |||| ||| Sbjct 375714 AGAGCGTACACGTTGGCACCCGAAAGATGGTAAACTATGCCTGGTCAGGACGAAGTCAGG 375655 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 |||||| ||| |||||| || |||| ||||| ||||||||||| Sbjct 375654 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCG 375611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079988803100