Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq30 343 3e-92 seq157 336 4e-90 seq505 298 9e-79 seq42 279 9e-73 seq518 201 2e-49 seq511 150 3e-34 seq36 138 2e-30 >seq30 Length=102876 Score = 343 bits (380), Expect = 3e-92 Identities = 243/275 (88%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 83256 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 83315 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 83316 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 83375 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83376 AATTCTGCTTTGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 83435 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||| ||||||||||||||||| |||| || || Sbjct 83436 TGAACGCTTGGCTGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTGACACCCCTTGCT 83495 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCC 272 ||| ||| | | | ||||||||||||| || Sbjct 83496 GAAAACTCTTCAA--GCCAAAAGGATCGATAGACC 83528 >seq157 Length=387809 Score = 336 bits (372), Expect = 4e-90 Identities = 232/259 (90%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 25 CGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACG 83 ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 13102 CGACGAGTCATCAGTAGGGTAAAACTAACCTTTCTCACGACGGTCTAAACCCAGCTCACG 13043 Query 84 TTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAA 143 ||||||||| |||||||||||||||||||||| |||| ||||||||| |||||||||| Sbjct 13042 TTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCGAACTCTGCTTCGCAATGATAGGAA 12983 Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12982 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 12923 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGG 261 ||||||| |||||||||| ||||| ||||||| || ||| ||| | | | ||||| Sbjct 12922 GTTATCCATGTGGTAACTCTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGG 12865 Query 262 ATCGATAGGCCACACTTTC 280 ||||||||||| ||||| Sbjct 12864 ATCGATAGGCCGTGCTTTC 12846 >seq505 Length=154513 Score = 298 bits (330), Expect = 9e-79 Identities = 238/283 (84%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| || ||||||||||||||||| |||| |||| Sbjct 122611 TACTGAGCAGGATTACTATCGCAACGACGAGTTATCAGTAGGGTAAAACTCACCTCTCTC 122670 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||| | || Sbjct 122671 ACGACGGTCAAAACCCATTTCACGTTCCCTATTGGTGGGTGAACAGTCCAACGTTCGGCG 122730 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 122731 AATTCTGCTTCGCAATGGTAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAGGTCGCTA 122790 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| || Sbjct 122791 TGAACGCTTTGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTCCTGACACCTCTTGCT 122850 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | ||||||||||||| || ||||| Sbjct 122851 GAAAACTCTTCAA--GCCAAAAGGATCGATAGACCGTGCTTTC 122891 >seq42 Length=78728 Score = 279 bits (308), Expect = 9e-73 Identities = 187/209 (89%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||||| ||||| ||| ||||| |||||||| ||||||||| ||||||||| Sbjct 29470 GTCATCAGTAGGGTTAAACTGACCCATCTCACGACGGTCTGAACCCAGCTTACGTTCCCT 29529 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||||||| |||||| || |||| |||||||||||||||| Sbjct 29530 ATTGGTGGGTGAACAATCCAACGCTTGGCGAATTTTGTTTCGCAATGATAGGAAGAGCCG 29589 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 29590 ACATCAAAGGATCAAAAAGCAACGTCACTATGAACGCTTGGCTGCCACAAGGTAGTTATC 29649 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||| |||||||| ||||||| || Sbjct 29650 CCTGTGGTGACTTTTCTAACACCTCTTGC 29678 Score = 203 bits (224), Expect = 6e-50 Identities = 171/210 (81%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||| |||||||| |||||| |||| ||||||||||||||||| |||||| ||||| Sbjct 20614 AACCCATCTCACGTTTCCTATTGGTGGATGAACAATCCAACGCTTGGCGAATTTTGCTTT 20673 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 | |||||||||| ||||| |||| |||||||||||||||||||| || ||||||||||| Sbjct 20674 GCGATGATAGGAAAAGCCGTCATCAAAGGATCAAAAAGCAACGTCACTTTGAACGCTTGG 20733 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 || |||||||| ||||| ||||||| ||||||||| ||||||| || ||| | | Sbjct 20734 TTGTTACAAGCCACTTATCTCTGTGGTGACTTTTCTGACACCTCTTGCTAAAAACTCCTC 20793 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTC 280 | | ||| ||| |||||||| ||||| Sbjct 20794 AAGTCAAAACGATTGATAGGCCGTGCTTTC 20823 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||||||||| ||| ||||||||||||| |||||||| ||||||||| |||||| ||| Sbjct 29988 TGAACGCTTGGTTGCTACAAGCCAGTTATTCCTGTGGTGACTTTTCTGACACCTCCTGCC 30047 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | ||| |||||||||||| ||||| Sbjct 30048 AAAAACTCTTCAA--GCCAAAACGATCGATAGGCCGTGCTTTC 30088 >seq518 Length=152403 Score = 201 bits (222), Expect = 2e-49 Identities = 154/181 (85%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || ||||| |||||||||||||| ||||||||| | || Sbjct 128689 TACTGAGCAGGATTACTATCACAACGACGACTCATCAGTAGGGTAGAACTAACCTTTGTC 128630 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| ||||||| |||||| |||||||||||| |||||||||||||||||||||| || Sbjct 128629 ACGACAGTCTAAATCCAGCTTACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 128570 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||| |||| |||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 128569 AATTCTGTTTCGCAATGATAATAAGAGCCGACATCGGAGGATCAAAAAGCAACGTCGCTA 128510 Query 180 T 180 | Sbjct 128509 T 128509 >seq511 Length=154927 Score = 150 bits (166), Expect = 3e-34 Identities = 123/148 (83%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||| ||| Sbjct 148856 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCCACCTC 148915 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | | ||||||||||||||| |||||||||||| ||| |||||||||||||||||| | Sbjct 148916 ACAATGGTCTAAACCCAGCTTACGTTCCCTATTGGTGAGTGAACAATCCAACGCTTGGTG 148975 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGC 147 |||||||||||| ||||||| |||||| Sbjct 148976 AATTCTGCTTCGTAATGATAGAAAGAGC 149003 >seq36 Length=68215 Score = 138 bits (152), Expect = 2e-30 Identities = 120/148 (81%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| || ||||||||||||| |||| || |||| Sbjct 6615 TACTGAGCAGGATTACTATCGCAACGACAAGTTATCAGTAGGGTAAGACTATCCCATCTC 6674 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || |||||| | ||||| |||||||||||| ||||||||||||||||||||||| | Sbjct 6675 ACAACCGTCTAAGCTCAGCTTACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTAGTG 6734 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGC 147 ||||||||| || ||||||| |||||| Sbjct 6735 AATTCTGCTGCGTAATGATAGAAAGAGC 6762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854395540032