Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq486 91.5 9e-17 seq157 91.5 9e-17 seq30 91.5 9e-17 seq84 87.8 1e-15 seq42 87.8 1e-15 seq19 84.2 1e-14 >seq486 Length=198290 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 14348 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 14404 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 14405 GGCAGGGACGTAAT-CAACGCGAGCT 14429 >seq157 Length=387809 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 70699 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 70643 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 70642 GGCAGGGACGTAAT-CAACGCGAGCT 70618 >seq30 Length=102876 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 96122 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 96178 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 96179 GGCAGGGACGTAAT-CAACGCGAGCT 96203 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| ||||| || |||||||| ||||||||||| |||||||||| Sbjct 87146 TCCGAA-GACCTCACTAAATCATTTAAT-CGGTAGTA-GCGACGGGCGGTGTGTACAAAG 87202 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||| |||||||| |||||| |||| Sbjct 87203 GGCAGAGACGTAAT-CAACGCGAGCT 87227 >seq84 Length=41600 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| | |||| || ||||||||| ||||||||||||||||||||| Sbjct 21263 TCCGAA-GACCTCACTCAATCATT-CAATCGGTAGTAC-CGACGGGCGGGGTGTACAAAG 21319 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 21320 GGCAGGGACGTAAT-CAACGCGAGCT 21344 >seq42 Length=78728 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||| ||| ||||||||||| |||||||||| Sbjct 40792 TCCGAA-GACCTCACTAAATCATT-CAATCGGTGGTA-GCGACGGGCGGTGTGTACAAAG 40848 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 40849 GGCAGGGACGTAAT-CAACGCGAGCT 40873 >seq19 Length=147286 Score = 84.2 bits (92), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| ||||||| || Sbjct 103539 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAGAG 103483 Query 99 GGCAGGGACGTAATACAACGCAAG 122 |||||||||||||| |||||| || Sbjct 103482 GGCAGGGACGTAAT-CAACGCGAG 103460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300798527960