Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30 394 3e-107 seq68 318 2e-84 seq157 176 1e-41 seq138 143 8e-32 >seq30 Length=102876 Score = 394 bits (436), Expect = 3e-107 Identities = 412/534 (77%), Gaps = 33/534 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | | | | ||| || ||||| ||||| | ||||||||| Sbjct 97371 GTACTCATTCCGATTACGGGGCTTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 97430 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | |||||| ||| | |||||||||||||||||||||| |||||||||||| |||||||| Sbjct 97431 TACCCGTGCCGGAAGAGGGTAATTTGCGCGCCTGCTGCTTTCCTTGGATGTAGTAGCCGT 97490 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 97491 TTCTCAAGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 97550 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG- 238 |||| | |||||||||||||||||||| ||||| |||| || || ||||||||| Sbjct 97551 AGGCGCAGAACCTACCATCGAAAGTTGATAAAGCAGACATTTAAAAGATGCATCGCCGGT 97610 Query 239 CTCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA--------GGAGCC--- 285 |||| || |||||| | |||||||| || ||||||| | || | Sbjct 97611 ACCAAGACCGTGCGATCAGCCCAAAGTTATTCAGAGTCACCAAAGTAAACGGCAGACGAG 97670 Query 286 CCGAA-----GGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGG---- 336 |||| || | | |||| |||||||||| || || ||||| || || Sbjct 97671 ACGAACCCGCCACCGATTGGTTTTGATCTAATAAAAGCATTCC-TCCGATCTCTGGTGGG 97729 Query 337 ---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTA 390 | || ||||||||||||||| |||||||||| ||||||| ||| || |||| Sbjct 97730 AACTCTGTTTGCATGTATTAGCTCTGGAATTACCACAGTTATCCGAGTAAATGT-GGGTA 97788 Query 391 CTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT 450 | ||| || |||| ||||||||||||||||||||||||| ||||||| || | || ||| Sbjct 97789 CGATCTAAGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATATGGCT 97847 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||| ||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 97848 TGCACTGAGACATGCATGGCTTGATCTTTAAGACAAGCATATGACTACTAGCAG 97901 >seq68 Length=1569599 Score = 318 bits (352), Expect = 2e-84 Identities = 342/446 (77%), Gaps = 30/446 (7%) Strand=Plus/Minus Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| Sbjct 99822 GCGCCTGCTGCCTTCCTTGGATCCGGTAGCTGTTTCTCAGGATCCCTCTCCGGAATCGAA 99763 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 |||| ||||||||||||||||| | |||||||||| | ||||||||||| ||||| Sbjct 99762 CCCTGATTCCCCGTTACCCGTTACAATCATGGTAGGCGCAGAACCTACCATCGACAGTTG 99703 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGG-CTCAAGGCCATGCGAT--TCGTTAAGT 263 ||| |||||| ||||||| || | ||||||| |||| || |||||| | ||| Sbjct 99702 ATAAGGCAGACATTTGAAAGATGCGTCGCCGGTACCAAGACCGTGCGATCAGCCCAGAGT 99643 Query 264 TATTATGAATCACCAA----------GGA-GCCCCGAA-----GGGCGTTGGTTTTTTAT 307 |||| || ||||||| ||| | |||| | || | | |||| || Sbjct 99642 TATTCAGAGTCACCAAAGTAAACGGCGGACGGGACGAACCCGCCGCCGATTGGTTTTGAT 99583 Query 308 CTAATAA----ATACACCCCTTCCGAAGTCGG--GGTTTTTAGCATGTATTAGCTCTAGA 361 ||||||| || | ||| || ||||| | || |||||||| ||||||||| Sbjct 99582 CTAATAAAAGCATTCCTCCCATCTCTGGTCGGAACTCTGTTTGCATGTATCAGCTCTAGA 99523 Query 362 ATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| |||||||| ||| || ||||| ||| || |||| || ||||||||| | Sbjct 99522 ATTACCACAGTTATCCAAGTAAATGT-GGGTACGATCCAAGAAACCATCACTGATTTATT 99464 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||| ||||||| | | || |||| ||| ||||||||||||||||||||| Sbjct 99463 GAGCCATTCGCGGTTTCAC-CTCAATATGGCTTGCACTGAGACATGCATGGCTTAATCTT 99405 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 99404 TGAGACAAGCATATGACTACTGGCAG 99379 >seq157 Length=387809 Score = 176 bits (194), Expect = 1e-41 Identities = 137/160 (86%), Gaps = 5/160 (3%) Strand=Plus/Minus Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACG 404 |||||||||||||||||||||| |||||||| ||| || ||||| ||| || |||| Sbjct 56616 GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACGATCTAAGAAACC 56558 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||| |||||| || | || |||| ||| |||| || Sbjct 56557 ATAACTGATTTAATGAGCCATTCGCGATTTCACCTTA-ATATGGCTTGCACTGAGACTTG 56499 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| |||||||||||||||||||||||||||||||| Sbjct 56498 CATGGCTCAATCTTTGAGACAAGCATATGACTACTGGCAG 56459 >seq138 Length=12648 Score = 143 bits (158), Expect = 8e-32 Identities = 116/137 (85%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAA 397 || |||||||||||||||||||||||||| |||||||| ||| || ||||| ||| | Sbjct 1597 TTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACGATCTA 1655 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | |||| ||||||||||||||||||||||||| ||||||| || | || |||| ||| Sbjct 1656 AGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA-ATATGGCTTGCACTG 1714 Query 458 AGACATGCATGGCTTAA 474 ||||||||||||||||| Sbjct 1715 AGACATGCATGGCTTAA 1731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392115712