Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq142 95.1 1e-14 >seq2 Length=4278185 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 65992 CACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGT 66051 ||||||| || | |||| ||||| || ||||| || || || || || || || Sbjct 516483 CACAAACATGTTGACAGCAATCGATGCAAGATTGCAAACCGCGATTTCATCGGGGCTGGA 516542 Query 66052 ATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATT 66111 ||| || ||||||||||| || || || ||||| || || || | |||||| ||||| Sbjct 516543 ATATTCTACAATTTCGGTACAAAGGTTGCTGCATTTAATAGTTCCAACATTCTGCTGATT 516602 Query 66112 ACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGA 66171 |||||||| || ||| || |||| |||||| || || ||||||||||| || || Sbjct 516603 GGATTTGCGATTACAGTGATCTTTATACAGCATGTAAGGTGTTCCGGTCTCAACCTGTGA 516662 Query 66172 CTCAATGATGGCGTGCCAAAGAGCGCGTGC 66201 | || ||||| ||| ||| | || || Sbjct 516663 GTTTATAATGGCTAACCAGAGATCTCGGGC 516692 >seq142 Length=137952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCTTCA 61453 ||||||||||||||||||| |||| ||| || ||| || | ||||| | | Sbjct 57230 TTGTTCAATGCCATCGAGAACCTACCTT--GTGTCGCAAAAAAAGCTAACTGGGCAATAA 57287 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||||||| | | || | ||||| || ||| | |||| ||||| | || | Sbjct 57288 ATTGGATCAATCATGATAGTGCAAATTTTGGAGAGCGAGTCGTGGCCTTTGCAGCAGTAG 57347 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 | || | |||||||| || ||||| || || || ||| |||||||||| ||||||| Sbjct 57348 AAGGAATCTTTTTCAGCGGTAGTTTTGCTGCCATATTCTGGCTGAAGAAACGCGGACTTA 57407 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 |||| || || || ||||||||||| | || || | ||||| Sbjct 57408 TGCCTGGGCTAACTTTCAGCAATGAACTCATTTCCAGAGACGA 57450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565470722080