Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2670 219 6e-55 seq51 147 3e-33 seq26 116 6e-24 >seq2670 Length=2080 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 1570 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 1513 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 1512 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 1453 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 1452 ACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 1396 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 1395 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 1339 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 1338 AGCCGCCTGTCCCTCTAA 1321 >seq51 Length=1949485 Score = 147 bits (162), Expect = 3e-33 Identities = 198/266 (74%), Gaps = 20/266 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||| ||||| |||| ||||||| ||||||||||||||| ||||| | Sbjct 1831107 GTACAAAGGATAGGAACGTAATCAATGCGAGCTC-ATGACTCGCGCTTACGGAGAATT-C 1831050 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| || |||| | ||||| | | |||| | || Sbjct 1831049 CTCGTTCATGGGGAACAATTGCAAGCTTCAATCCGTAGCACGAAGGAGGTTCAGCGGGTT 1830990 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 1830989 ACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTTCTTCAGTGTAGCGCGCGTGCG 1830933 Query 180 GCCCAGAA--------CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 | || || ||||||||||||||||||| ||||||||| ||||| || |||| Sbjct 1830932 GTCCTAAAAAGGGCCGCATCTAAGGGCATCACAGA-CTGTTATTG-CTCAATCT--CGTG 1830877 Query 232 -GCCTAAAAGGC-CATCTCCCTCGAA 255 | ||| ||| | | | |||||| || Sbjct 1830876 CGGCTAGAAGCCGCCTGTCCCTCTAA 1830851 >seq26 Length=4473850 Score = 116 bits (128), Expect = 6e-24 Identities = 187/259 (72%), Gaps = 25/259 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| | || |||||||| |||| ||||||||||| |||||| | Sbjct 1889182 GTACAAAGGGAAGGGACGTAATTAATGCGAGCTT-ATGATTCGCGCTTACTGGGAATT-C 1889239 Query 61 CTCGTTGAAGACCAACAATTG-CAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 |||||| | | || |||| ||| || ||||| | ||||| | | | || Sbjct 1889240 CTCGTTTATGGGGAATAATTAACAAGTCTCAATCCCTAGCACGAAGGA--------GGTT 1889291 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | |||| || | ||| | || || || ||| | | |||||||||| |||| | Sbjct 1889292 ATCCGGGTCTTTTGGCTAGGGC-----ACACGCTGATTCCTTCAGTGTAGCATGCGTACA 1889346 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||| ||||||||||||| |||||| ||||| || |||| | ||| | Sbjct 1889347 CTCCAGAACATCTAAAGGCATCACAGACC--TTATTG-CTCAATCT--CGTGCGGCTAGA 1889401 Query 239 AG--GCCATCTCCCTCGAA 255 || ||| | |||||| || Sbjct 1889402 AGCTGCC-TGTCCCTCTAA 1889419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751979339740