Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2670 183 6e-44 seq51 109 1e-21 seq26 95.1 2e-17 >seq2670 Length=2080 Score = 183 bits (202), Expect = 6e-44 Identities = 216/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| | || ||||||||||| ||||||||||| | Sbjct 601 TGCTCTTTACTGAGTGTCGAGTCGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 660 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| | | || |||||| |||||||||||| ||||||||| | |||| Sbjct 661 AAAGCAGGCTATCCTCGCCTGAATACTGCGTGCATGGAATAATGGAATAGGACCT-CGGT 719 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 720 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 778 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 779 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 838 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 839 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 883 >seq51 Length=1949485 Score = 109 bits (120), Expect = 1e-21 Identities = 187/263 (71%), Gaps = 19/263 (7%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||| | || ||||||||||| ||||||||||||| ||||||||| | || |||||| Sbjct 1830176 GCCGGTACATTTACTTTGAACAAATTAGAGTGTTTAAAGCAGGCTATCGCCTGAATAC-- 1830233 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGAC-CGCC 182 || ||||||||| || ||||| | ||||||||||||||||| |||| | | | Sbjct 1830234 -TGCGTGGAATAATGGA--AGGACCT-CGGTTCTATTTTGTTGGTTTTCGAAATCTCAAG 1830289 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| | ||| | | ||||| | ||| ||||||||| Sbjct 1830290 ATAATGATTAATAGGGATTGATGGGAATATTCGTATTGCGACGATAGA---GAAATTCTT 1830346 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA------TTA 296 |||| ||||| || |||||||| || |||| ||||||||| || Sbjct 1830347 GGATCGTCGCAAGACGAATAGAAGCGAAAGCATTTGCCAAAAATGTTTTCAAGAAATGTA 1830406 Query 297 ATCAGTGAACGAAA-GTTAGGGG 318 |||| |||||||| ||||| || Sbjct 1830407 ATCA-AGAACGAAAGGTTAGAGG 1830428 >seq26 Length=4473850 Score = 95.1 bits (104), Expect = 2e-17 Identities = 182/258 (71%), Gaps = 34/258 (13%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 || ||||||||||| |||||||||| || ||||| || || |||||| |||| Sbjct 1890070 ACGTTTACTTTGAACAAATTAGAGT----AACGCAGGTTATT-CT-GAATACT---GCAT 1890020 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GCCGTAATG 188 |||||| |||| | | |||||||||| ||||||| | | || | |||||| Sbjct 1890019 GGAATA--------GGACCT-CAGTTCTATTTTATTGGTTTTTGGAACTCTGAAGTAATG 1889969 Query 189 A-TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGG------TGAAATTCT 241 | ||||||| ||||| || | | ||||| ||| ||||| ||||||||| Sbjct 1889968 AATTAATAGAGATAGATGGAAGCATTCGTATTGCGATGTTAGAGGAAAACGTGAAATTCT 1889909 Query 242 TGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| || | ||||| | |||||||| || |||| |||||||||||||||| Sbjct 1889908 TGGATC-ATCGCAAGACAGAA----GCGAAAGCATTTGCCAAAAATGTTTTCATTAATCA 1889854 Query 301 GTGAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 1889853 -AGAACGAAAGTTAGAGG 1889837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915174044928