Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2356 136 2e-29 seq38 77.0 1e-11 >seq2356 Length=2236 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| ||||||| Sbjct 417 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 476 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 477 A-CGACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 535 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 536 GAGAGAGTTCAAGAGTACGTGAAA 559 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1254 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 1313 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 1314 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 1373 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1374 ATAGGGGCGA 1383 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG----TGTCA 463 ||||||||| |||||||||||||||||||||||| || |||||| ||||| || | Sbjct 1070 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTACGCGAGTCATTGGGACTTTGCGA 1129 Query 464 AACCCGTGCGCGTAATGAAAGTGAA 488 ||| |||||||||||||||| Sbjct 1130 TACCTAAAGGCGTAATGAAAGTGAA 1154 >seq38 Length=2896495 Score = 77.0 bits (84), Expect = 1e-11 Identities = 96/131 (73%), Gaps = 8/131 (6%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||||| | ||| | |||||||||| |||||||| ||| |||| ||| Sbjct 2803550 AGAGCATATACGGTGGAATCCGAAAGATG-------ATGCCTGATCAGGAAGAAGTCAGG 2803498 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA-AATTTGGG 672 || ||| || |||| |||||| ||||| || ||||||||||||||| |||| | Sbjct 2803497 GGCAACCCTAATGGAATTCTGCAGCGATTCTGACGAGCAAATCGATCGTCAGAATTATAG 2803438 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 2803437 TATAGGGGCGA 2803427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079939167800