Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2670 214 3e-53 seq51 120 5e-25 seq26 116 6e-24 >seq2670 Length=2080 Score = 214 bits (236), Expect = 3e-53 Identities = 217/292 (74%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1418 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 1359 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 1358 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 1301 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | ||||| || || || || | ||||| Sbjct 1300 GTAGTAAAAACCCACCGGCCGAAGCCGGGGGCCTTCGCGATACCATAAGGTACGCCTATT 1241 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1240 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 1181 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1180 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 1129 >seq51 Length=1949485 Score = 120 bits (132), Expect = 5e-25 Identities = 97/116 (84%), Gaps = 10/116 (9%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1830780 TATTTAGCAGGCTAGAGTCTC--TCGTTATCGGAATTAACCAGACAAATCGCTCCACCAA 1830723 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||||||| | ||| ||||||||||| ||| |||||||||| Sbjct 1830722 CTAAGA------ATGCACCACTATCCACCGAATCAAGAAAAAGC--TCAATCTGTC 1830675 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 11/108 (10%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAA--------CATCTAAGGGCATCACAGACCTGTT 67 |||||||||||||||||||| || || ||||||||||||||||||| ||||| Sbjct 1830951 TCAGTGTAGCGCGCGTGCGGTCCTAAAAAGGGCCGCATCTAAGGGCATCACAGA-CTGTT 1830893 Query 68 ATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||| ||||| | || |||| |||||| |||||||||||||| Sbjct 1830892 ATTG-CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 1830847 >seq26 Length=4473850 Score = 116 bits (128), Expect = 6e-24 Identities = 97/119 (82%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 ||||||||| |||| ||||||||||||| |||||||| |||||||||| |||||||||| Sbjct 1889498 TTTAGCAGGCTAAGATCTCGTTCGTTATTGGAATTAATCAGACAAATCGCTCCACCAACA 1889557 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCC 263 |||||| ||||||||| ||| |||||||||||||| ||| || |||| || Sbjct 1889558 AAGAAC------GCACCACCATCCACCAAATCAAGAAAGAGCAATCTGTCAATCCTTCC 1889610 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||| |||| | ||||||||||||| ||||||||||||| |||||| Sbjct 1889324 TCCTTCAGTGTAGCATGCGTACACTCCAGAACATCTAAAGGCATCACAGACC--TTATTG 1889381 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| ||||| |||||||||||||| Sbjct 1889382 -CTCAATC-TCGTGCGGCTAGAAGCTGCCTGTCCCTCTAAGAAG 1889423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796778108916