Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01002034.1 Length=277 Score E Sequences producing significant alignments: (Bits) Value seq62 78.8 1e-12 seq42 78.8 1e-12 >seq62 Length=1311589 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 24 TTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAA 83 ||||| |||| ||||| ||||| ||||| | ||| |||| | ||| ||||| | Sbjct 43735 TTATAATTTTCTTTGTATGTTGATGCAAGTTTACAATTACGTACAGATTTCAGTTTACGA 43676 Query 84 TCAGTACTTAACGTAACGTAACACGTTACGGAGAAG-CTTGTGC 126 |||||| |||||||||||||||||||||| ||| | ||||||| Sbjct 43675 TCAGTATTTAACGTAACGTAACACGTTAC--AGATGTCTTGTGC 43634 >seq42 Length=2518118 Score = 78.8 bits (86), Expect = 1e-12 Identities = 73/93 (78%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACG------GGTTTAGGTTTATA 82 |||||||||||||||||| | ||||| | ||| | |||| ||||||||||||| Sbjct 1288052 TTTTTGTTTGTGCGTTGATTAAAGTTTTAATTTTTATACGGGTTTAGGTTTAGGTTTATG 1288111 Query 83 ATCAGTACTTAACGTAACGTAACACGTTACGGA 115 |||| |||||||| ||| || | | |||||||| Sbjct 1288112 ATCACTACTTAACATAATGTGATATGTTACGGA 1288144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787178372664