Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq2670 228 2e-57
seq51 150 3e-34
seq26 129 1e-27
>seq2670
Length=2080
Score = 228 bits (252), Expect = 2e-57
Identities = 208/258 (81%), Gaps = 6/258 (2%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||||||||||
Sbjct 1317 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1374
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct 1375 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 1431
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
|| |||||| |||| | |||||| | | || ||| ||||||| ||||| | | |||
Sbjct 1432 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 1491
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
||||| || | | | |||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 1492 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1551
Query 311 ACGTCCCTGCCCTTTGTA 328
||||||||||||||||||
Sbjct 1552 ACGTCCCTGCCCTTTGTA 1569
>seq51
Length=1949485
Score = 150 bits (166), Expect = 3e-34
Identities = 196/266 (74%), Gaps = 15/266 (6%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| ||||| | ||||| || | ||||| ||||||||| ||||||
Sbjct 1830847 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAG-TCTGTG 1830903
Query 131 ATGCCCTTAGATG--------TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182
||||||||||||| || || |||||||||||||||||||| | || ||
Sbjct 1830904 ATGCCCTTAGATGCGGCCCTTTTTAGGACCGCACGCGCGCTACACTGAAGAAATCAGCGT 1830963
Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242
|| || |||||| |||| | |||||| | | || ||| ||||||| ||||
Sbjct 1830964 GT---GTTCCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTACGGATT 1831020
Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302
|| |||||||| || | | | |||||||||| | ||||||||| ||||| ||| ||
Sbjct 1831021 GAAGCTTGCAATTGTTCCCCATGAACGAGGAATTCTCCGTAAGCGCGAGTCATGAGCTCG 1831080
Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328
| |||||||||| ||| ||||||||
Sbjct 1831081 CATTGATTACGTTCCTATCCTTTGTA 1831106
>seq26
Length=4473850
Score = 129 bits (142), Expect = 1e-27
Identities = 187/259 (72%), Gaps = 20/259 (8%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | ||||| || | ||||| |||||| ||||||||
Sbjct 1889423 CTTCTTAGAGGGACAGGCAGCTTCTAGCCGCACGA-GATTGAG-CAATAA--GGTCTGTG 1889368
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
||||| ||||||||||||| | |||| |||||||||| || || || || |
Sbjct 1889367 ATGCCTTTAGATGTTCTGGAGTGTACGCATGCTACACTGAAGGAATCAGCGTGTGC---- 1889312
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
| | ||| ||| | || ||| || || |||||| ||||| ||| |||
Sbjct 1889311 -CCTAGCCAAAAGACCCGGATAACCTCCTT---------CGTGCTAGGGATTGAGACTTG 1889262
Query 251 C-AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||| | | | |||||||||| || |||||||||| |||| ||| ||| || ||
Sbjct 1889261 TTAATTATTCCCCATAAACGAGGAATTCCCAGTAAGCGCGAATCATAAGCTCGCATTAAT 1889202
Query 310 TACGTCCCTGCCCTTTGTA 328
||||||||| |||||||||
Sbjct 1889201 TACGTCCCTTCCCTTTGTA 1889183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947173137408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |