Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2670 228 2e-57 seq51 150 3e-34 seq26 129 1e-27 >seq2670 Length=2080 Score = 228 bits (252), Expect = 2e-57 Identities = 208/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 1317 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1374 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 1375 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 1431 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 1432 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 1491 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1492 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1551 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1552 ACGTCCCTGCCCTTTGTA 1569 >seq51 Length=1949485 Score = 150 bits (166), Expect = 3e-34 Identities = 196/266 (74%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| ||||||||| |||||| Sbjct 1830847 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAG-TCTGTG 1830903 Query 131 ATGCCCTTAGATG--------TTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGA 182 ||||||||||||| || || |||||||||||||||||||| | || || Sbjct 1830904 ATGCCCTTAGATGCGGCCCTTTTTAGGACCGCACGCGCGCTACACTGAAGAAATCAGCGT 1830963 Query 183 GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 || || |||||| |||| | |||||| | | || ||| ||||||| |||| Sbjct 1830964 GT---GTTCCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTACGGATT 1831020 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 || |||||||| || | | | |||||||||| | ||||||||| ||||| ||| || Sbjct 1831021 GAAGCTTGCAATTGTTCCCCATGAACGAGGAATTCTCCGTAAGCGCGAGTCATGAGCTCG 1831080 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||||||| ||| |||||||| Sbjct 1831081 CATTGATTACGTTCCTATCCTTTGTA 1831106 >seq26 Length=4473850 Score = 129 bits (142), Expect = 1e-27 Identities = 187/259 (72%), Gaps = 20/259 (8%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | ||||| || | ||||| |||||| |||||||| Sbjct 1889423 CTTCTTAGAGGGACAGGCAGCTTCTAGCCGCACGA-GATTGAG-CAATAA--GGTCTGTG 1889368 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| ||||||||||||| | |||| |||||||||| || || || || | Sbjct 1889367 ATGCCTTTAGATGTTCTGGAGTGTACGCATGCTACACTGAAGGAATCAGCGTGTGC---- 1889312 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | | ||| ||| | || ||| || || |||||| ||||| ||| ||| Sbjct 1889311 -CCTAGCCAAAAGACCCGGATAACCTCCTT---------CGTGCTAGGGATTGAGACTTG 1889262 Query 251 C-AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| | | | |||||||||| || |||||||||| |||| ||| ||| || || Sbjct 1889261 TTAATTATTCCCCATAAACGAGGAATTCCCAGTAAGCGCGAATCATAAGCTCGCATTAAT 1889202 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||||| Sbjct 1889201 TACGTCCCTTCCCTTTGTA 1889183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947173137408