Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27]
2,836 sequences; 317,690,795 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq51 237 5e-60
seq63 156 1e-35
seq37 143 9e-32
seq38 131 5e-28
seq24 102 3e-19
>seq51
Length=1949485
Score = 237 bits (262), Expect = 5e-60
Identities = 326/450 (72%), Gaps = 33/450 (7%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||||||||||| ||| | | |||||||||| || ||
Sbjct 1828721 CTTTTGCTCTACGTGAGATTTCTGTCCTCGCTAAACTGGCCTTAGGACATCT-----ATT 1828667
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||||||| |||||||| |||||||| |||| | |||| || | ||||||
Sbjct 1828666 CTTTGACAGATGTATCGCCCCAGTCAAACTCCTTGCCTGGTAGTGTCCTCGAATCGGATC 1828607
Query 127 G-GC-----------CCGCGAAGGACC-----TTAACGC---CAGAAAATGGTCGGTGAA 166
|| | |||| | || || || | || || |||||| |
Sbjct 1828606 ACGCGGGAGTATCATCGGCGATCGGCCGAGGCTTCACTCTGACATGAAGCCCTCGGTGTA 1828547
Query 167 GACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226
| | ||||| | ||| | ||||| || ||| | |||||||||||||| ||
Sbjct 1828546 CGC--GCTCCGCCCAACTGAATGAGTAAGGAAT-GATGAAAGTAGTGGTATTTCATCGGC 1828490
Query 227 GCCGAAACGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285
| | | ||||||||||| |||||||| ||| ||| | ||| | | |||||||
Sbjct 1828489 GATGTTGCCATCTCCCACTTATGCTACACCTATCATGTCTCCTTACAGTGCCAGACTAGA 1828430
Query 286 GTCA---AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342
|||| ||||||||| | |||| | | ||| || ||| ||||||||||| |||||||
Sbjct 1828429 GTCAGTAAGCTCAACAAGATCTTTTCTTCCCACTAATTTT-CCAAGCCCGTTTCCTTGGC 1828371
Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828370 GGTAGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 1828311
Query 403 TCACTAATTAGATGACGAGGCATTTGGCTA 432
|||||||||||||||||||||||||| |||
Sbjct 1828310 TCACTAATTAGATGACGAGGCATTTGACTA 1828281
>seq63
Length=1260229
Score = 156 bits (172), Expect = 1e-35
Identities = 179/238 (75%), Gaps = 17/238 (7%)
Strand=Plus/Minus
Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGC----TCCCACTTATTCTA-----CACC 255
|| |||||||||||||||| ||| | | || ||| |||||| ||| || |
Sbjct 552568 AGTGTAGTGGTATTTCACTGGCG---ATATTGCCATCTCCTACTTATGCTATTGTACATC 552512
Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315
| ||| ||| || | | | || |||||||||||||| || || || |||||| ||
Sbjct 552511 TATCATGTCTCTTTATAGTACCAGATTAGAGTCAAGCTCATTAGAGTTTT-TTTCCCTGC 552453
Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375
| ||| |||| | | |||||||||| |||||||||||||||||||| |||| |||
Sbjct 552452 TAATTTTTCCAAACTCATTCCCTTGGCAGTGGTTTCGCTAGATAGTAG----GGACTGTG 552397
Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433
|||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||||
Sbjct 552396 GGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGGTGATCAAACATTTAACTAC 552339
>seq37
Length=2964283
Score = 143 bits (158), Expect = 9e-32
Identities = 93/102 (91%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489
|| |||||||| ||| ||||||||||||| |||||| ||||||||| |||||||| ||||
Sbjct 311461 CTCCCTTAAGAAAGTTATAGTTACTCCCGTCGTTTATCCGCGCTTGCTTGAATTTTTTCA 311402
Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 311401 CATTGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAA 311360
Score = 91.5 bits (100), Expect = 5e-16
Identities = 68/79 (86%), Gaps = 7/79 (9%)
Strand=Plus/Minus
Query 359 AGTAGATAGGGACAGTGGGAA-----TCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413
||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||
Sbjct 315491 AGTAGATAGGGACAGCAAGAAATCCATCTCGTTAATCCATTCATGCGTGTCACT--TTAG 315434
Query 414 ATGACGAGGCATTTGGCTA 432
|||||||||||||||||||
Sbjct 315433 ATGACGAGGCATTTGGCTA 315415
>seq38
Length=2896495
Score = 131 bits (144), Expect = 5e-28
Identities = 89/100 (89%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493
||||| | ||| ||||||| |||||||||||| | ||||||| |||||||||||||| ||
Sbjct 2801856 CTTAAAAAAGTTATAGTTAGTCCCGCCGTTTATCTGCGCTTGCTTGAATTTCTTCACGTT 2801915
Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| |||||||||||||||||||||||| ||||| ||||||
Sbjct 2801916 GATATTCAGAGCACTGGGCAGAAATCATATTGCATCAACA 2801955
>seq24
Length=4810721
Score = 102 bits (112), Expect = 3e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522
|||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 3960802 TTACCCGCGCTTACTTGAATTTCTTCATGTTGATATTCAGAGCACTAGGCAGAAATCACA 3960861
Query 523 TTGCGTCAACA 533
|||||||||||
Sbjct 3960862 TTGCGTCAACA 3960872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635153625728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |