Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq51 237 5e-60 seq63 156 1e-35 seq37 143 9e-32 seq38 131 5e-28 seq24 102 3e-19 >seq51 Length=1949485 Score = 237 bits (262), Expect = 5e-60 Identities = 326/450 (72%), Gaps = 33/450 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||| ||| | | |||||||||| || || Sbjct 1828721 CTTTTGCTCTACGTGAGATTTCTGTCCTCGCTAAACTGGCCTTAGGACATCT-----ATT 1828667 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| |||||||| |||||||| |||| | |||| || | |||||| Sbjct 1828666 CTTTGACAGATGTATCGCCCCAGTCAAACTCCTTGCCTGGTAGTGTCCTCGAATCGGATC 1828607 Query 127 G-GC-----------CCGCGAAGGACC-----TTAACGC---CAGAAAATGGTCGGTGAA 166 || | |||| | || || || | || || |||||| | Sbjct 1828606 ACGCGGGAGTATCATCGGCGATCGGCCGAGGCTTCACTCTGACATGAAGCCCTCGGTGTA 1828547 Query 167 GACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 | | ||||| | ||| | ||||| || ||| | |||||||||||||| || Sbjct 1828546 CGC--GCTCCGCCCAACTGAATGAGTAAGGAAT-GATGAAAGTAGTGGTATTTCATCGGC 1828490 Query 227 GCCGAAACGG-CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | | | ||||||||||| |||||||| ||| ||| | ||| | | ||||||| Sbjct 1828489 GATGTTGCCATCTCCCACTTATGCTACACCTATCATGTCTCCTTACAGTGCCAGACTAGA 1828430 Query 286 GTCA---AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 |||| ||||||||| | |||| | | ||| || ||| ||||||||||| ||||||| Sbjct 1828429 GTCAGTAAGCTCAACAAGATCTTTTCTTCCCACTAATTTT-CCAAGCCCGTTTCCTTGGC 1828371 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1828370 GGTAGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 1828311 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||| ||| Sbjct 1828310 TCACTAATTAGATGACGAGGCATTTGACTA 1828281 >seq63 Length=1260229 Score = 156 bits (172), Expect = 1e-35 Identities = 179/238 (75%), Gaps = 17/238 (7%) Strand=Plus/Minus Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGC----TCCCACTTATTCTA-----CACC 255 || |||||||||||||||| ||| | | || ||| |||||| ||| || | Sbjct 552568 AGTGTAGTGGTATTTCACTGGCG---ATATTGCCATCTCCTACTTATGCTATTGTACATC 552512 Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 | ||| ||| || | | | || |||||||||||||| || || || |||||| || Sbjct 552511 TATCATGTCTCTTTATAGTACCAGATTAGAGTCAAGCTCATTAGAGTTTT-TTTCCCTGC 552453 Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 | ||| |||| | | |||||||||| |||||||||||||||||||| |||| ||| Sbjct 552452 TAATTTTTCCAAACTCATTCCCTTGGCAGTGGTTTCGCTAGATAGTAG----GGACTGTG 552397 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||||||||| ||||||||||| ||| | ||||| |||| Sbjct 552396 GGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGGTGATCAAACATTTAACTAC 552339 >seq37 Length=2964283 Score = 143 bits (158), Expect = 9e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||| ||| ||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct 311461 CTCCCTTAAGAAAGTTATAGTTACTCCCGTCGTTTATCCGCGCTTGCTTGAATTTTTTCA 311402 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | ||||||||||||||||||||||||||||| |||||||||| Sbjct 311401 CATTGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAA 311360 Score = 91.5 bits (100), Expect = 5e-16 Identities = 68/79 (86%), Gaps = 7/79 (9%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAA-----TCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||||||||||| ||| ||||||||||||||||||||| |||||| |||| Sbjct 315491 AGTAGATAGGGACAGCAAGAAATCCATCTCGTTAATCCATTCATGCGTGTCACT--TTAG 315434 Query 414 ATGACGAGGCATTTGGCTA 432 ||||||||||||||||||| Sbjct 315433 ATGACGAGGCATTTGGCTA 315415 >seq38 Length=2896495 Score = 131 bits (144), Expect = 5e-28 Identities = 89/100 (89%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| | ||| ||||||| |||||||||||| | ||||||| |||||||||||||| || Sbjct 2801856 CTTAAAAAAGTTATAGTTAGTCCCGCCGTTTATCTGCGCTTGCTTGAATTTCTTCACGTT 2801915 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||||||||||||| ||||| |||||| Sbjct 2801916 GATATTCAGAGCACTGGGCAGAAATCATATTGCATCAACA 2801955 >seq24 Length=4810721 Score = 102 bits (112), Expect = 3e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||| Sbjct 3960802 TTACCCGCGCTTACTTGAATTTCTTCATGTTGATATTCAGAGCACTAGGCAGAAATCACA 3960861 Query 523 TTGCGTCAACA 533 ||||||||||| Sbjct 3960862 TTGCGTCAACA 3960872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635153625728