Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2670 293 7e-77 seq26 260 4e-67 seq8 77.0 1e-11 >seq2670 Length=2080 Score = 293 bits (324), Expect = 7e-77 Identities = 237/283 (84%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 369 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 310 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 250 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 249 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 190 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 189 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 130 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA 279 | ||| || |||||| | |||||||| || ||||||| Sbjct 129 GCTAAGACCGTGCGATCAGCACAAAGTTATTCAGAGTCACCAA 87 >seq26 Length=4473850 Score = 260 bits (288), Expect = 4e-67 Identities = 384/533 (72%), Gaps = 48/533 (9%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||| ||||| | || | | ||| | |||| ||||| | ||||||||||| Sbjct 1890324 ACTCATTCCGATTACGGGTCCTCGGATGAGTTCCGTATTGTTATTTTTCGTCACTACCTC 1890383 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1890384 CCCGTGCCGGAAGTGACTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1890443 Query 122 CTCAG--GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| || |||||||||||| || ||| ||||| |||||||||| || ||| | Sbjct 1890444 TTCAGATTTTCTCTCTCCGGAATCAAATCCTGATTCCTCGTTACCCGT---AACAATGAT 1890500 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 | || | | ||||||||| |||||||| ||| | || |||| || |||||| || Sbjct 1890501 AAGC--AGAACTTACCATCGACAGTTGATAAAGCAAATATCTGAAAGATGCATCGCTGGT 1890558 Query 240 TC-AAGGCCATGCGATTCGTTA---AGTTATTATGAATCACC---------AAGGAGCCC 286 | || | |||||| |||| ||||| | ||| | | | ||| | Sbjct 1890559 GCTAAAATCGTGCGATCAGTTATTCAGTTACCA-AAATAAACGGTGGATGGATGGATAAC 1890617 Query 287 CGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTCGGG--- 336 || | || | | |||| |||||||||| | | ||||| |||||| Sbjct 1890618 CGTTCGCCATCGATTGATTTTGATCTAATAAAAGCGTCTCTTCCATCATTGGTCGGGACT 1890677 Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTA 393 | ||| ||||||||||||||||||||||| || |||||| | ||| || ||||| | Sbjct 1890678 CTATTTTGCATGTATTAGCTCTAGAATTACTACAGTTATCTAAGTAAATGT-GGGTACAA 1890736 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTT 451 | ||| ||| |||||||||| ||||| || |||||| | || ||| || | Sbjct 1890737 CCTAATGAACCATAACTGATTAAATGA-------GCGGTTTCATTTTA---ATTCGGCAT 1890786 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1890787 GCACTGAGACATGCATGGCTTAATCTTTGAGACAAGTATATGACTACTGGCAG 1890839 >seq8 Length=7313927 Score = 77.0 bits (84), Expect = 1e-11 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| |||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 629196 ACTGAGACATACATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCA 629147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510357165056