Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30 116 3e-21 >seq30 Length=3857846 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| || || || ||||||||||| || |||||||| ||||||||| || | || | Sbjct 1773387 CATGTTTTAGCATTTTTTGCCGCTTCCGATGGTATCGTTAATGAGAATCTAATTGAGAGA 1773328 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || || ||| || | || || || ||||||||||| ||||| || |||||||| Sbjct 1773327 TTCAGCCAAGAAGTGAAAATTTCCGAAGCACGTTGTTTCTATGGCTTTCAAATTGCCATA 1773268 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||| | || || ||||||||| | | ||||| || || || || Sbjct 1773267 GAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAACTTATAT 1773221 Score = 109 bits (120), Expect = 4e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || || ||||| || ||||| | || || ||| ||| || ||||||| || || Sbjct 1772204 TTATTTAATGCGATTGAGACACTTCCTTGTGTCAAGAAGAAGGCTAATTGGGCATTAAAC 1772145 Query 61456 TGGATCAC-CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||||| || | | || |||| ||| ||||| | | |||||||||| || || Sbjct 1772144 TGGATCAATCATGAGAGCG-CTACGTTTCCCGAACGTGTAGTCGCATTTGCGGCAGTTGA 1772086 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 |||| | || |||||||| || || || || |||||| | |||||||| ||| | || Sbjct 1772085 GGGTATCTTCTTCAGTGGCAGTTTCGCAGCCATTTTTTGGCTAAAGAAACGAGGAGTCAT 1772026 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||| ||||| ||||||||||| || | || ||||| ||||| Sbjct 1772025 GCCAGGTCTCACCTTCAGCAACGAACTTATCTCACGAGACGA 1771984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554258559040