Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1467 473 2e-131 seq743 183 6e-44 seq1525 129 1e-27 >seq1467 Length=10200 Score = 473 bits (524), Expect = 2e-131 Identities = 294/314 (94%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||| ||| || |||||||||||||||||||| |||||| Sbjct 4135 TGGTCCGGCCGGGCCTTTCCCTCTGTGGAACCCCATGCCCTTCACTGGGTGTGGCGGGGA 4076 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 |||||||||||||||||||||||||||||| || | |||||||| ||||||||||||| Sbjct 4075 AACAGGACTTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAGGCCTATGCTCGAATACAT 4016 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4015 TAGCATGGAATAATGAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 3956 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3955 AATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 3896 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 3895 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 3837 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 3836 ACGAAAGTTAGGGG 3823 >seq743 Length=788 Score = 183 bits (202), Expect = 6e-44 Identities = 216/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| | || ||||||||||| ||||||||||| | Sbjct 588 TGCTCTTTACTGAGTGTCGAGTCGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 529 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| | | || |||||| |||||||||||| ||||||||| | |||| Sbjct 528 AAAGCAGGCTATCCTCGCCTGAATACTGCGTGCATGGAATAATGGAATAGGACCT-CGGT 470 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 469 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 411 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 410 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 351 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 350 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 306 >seq1525 Length=581956 Score = 129 bits (142), Expect = 1e-27 Identities = 208/292 (71%), Gaps = 19/292 (7%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | ||| | || ||||||||||| ||||||||||||| Sbjct 520980 ATGCTCTTTACTGAGTGTCGAGTCAGGCCGGTACATTTACTTTGAACAAATTAGAGTGTT 520921 Query 99 CAAAGCAGGC---CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| | | || |||||| || ||||||||| ||| |||| | |||| Sbjct 520920 TAAAGCAGGCTATCCTCGCCTGAATACT---GCGTGGAATAATGGAA--GGACCT-CGGT 520867 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||| ||| | ||||||||||||||||| | ||| || | Sbjct 520866 TCTATTTTGTTGGTTTTCGAAACCTCAAGATAATGATTAATAGGGATTGATGGGAGTATT 520807 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| | ||||||||||||||||||| ||||| || |||||||| Sbjct 520806 CGTATTGCGACGATAGAGGTGAAATTCTTGGATCGTCGCAAGACGAATAGAAGCGAAAGC 520747 Query 274 GTTCACCAAGGATGTTTTCA------TTAATCAGTGAACGAAA-GTTAGGGG 318 || |||| ||||||||| |||||| |||||||| ||||| || Sbjct 520746 ATTTGCCAAAAATGTTTTCAAGAAATGTAATCA-AGAACGAAAGGTTAGAGG 520696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915185814400