Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1467 717 0.0 seq1060 136 2e-29 >seq1467 Length=10200 Score = 717 bits (794), Expect = 0.0 Identities = 572/678 (84%), Gaps = 13/678 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1738 GCCGAGCCTCTGTGAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAATG 1679 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1678 GGAGGTATATGTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGT 1619 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||| Sbjct 1618 GATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAACAGTACGTGAAATTGTTGAAAG 1559 Query 193 GGAAGCGCTTGCAACCAGAC-TTGCCCGCAGTTGCTCAACCGGC--CCCTCGGCCGGTGC 249 ||||||||| | ||||||| | | || | | | ||| || || | | || ||||| Sbjct 1558 GGAAGCGCTCGTGACCAGACGTGGGCCTCGGCGGATCATCCAGCGGTCTCCCGCTGGTGC 1499 Query 250 ACTCTTCTGCGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTG 309 |||| | | | |||||||||||||| | | | | |||||||||| ||||||| ||| Sbjct 1498 ACTCCGCCGGGCCCAGGCCAGCATCAGTTTGCCCTGGGGGATAAAGGCTCCGGGAACGTG 1439 Query 310 GCCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCG 369 || || || ||| ||||||||||||| | | ||| | | | |||||||||| || Sbjct 1438 GCTCC--TCCGGGAGTGTTATAGCCCGCCGCGCAATAC-CCTGGGGCGGACTGAGGTTCG 1382 Query 370 CG---CTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGAC 426 || || ||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 1381 CGCATCTTTTGCTAGGATGCTGGCGTAATGGTTATCAGCGGCCCGTCTTGAAACACGGAC 1322 Query 427 CAAGGAGTCTAACATC-TATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGT 485 ||||||||| | || |||||||||||| ||||||||||||| | |||| ||||||||| Sbjct 1321 CAAGGAGTC-GTCTTCGTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGGAATGAAAGT 1263 Query 486 GAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGA 545 ||||| ||||| || ||| | ||| ||| ||||||||||||||||||| ||||||||| Sbjct 1262 GAACGCAGGTGAGAGCCC-TCTGGGCGCATCATCGACCGATCCTGATGTTCTCGGATGGA 1204 Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 |||||||||||||||| | |||||||||||| ||||||||||||||| |||||||| Sbjct 1203 TTTGAGTAAGAGCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTG 1144 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1143 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAA 1084 Query 666 ATTTGGGTATAGGGGCGA 683 || |||| || ||||||| Sbjct 1083 ATATGGGCATGGGGGCGA 1066 >seq1060 Length=3336 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1179 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 1120 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 1119 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 1060 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 1059 ATAGGGGCGA 1050 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| ||||||| Sbjct 2016 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1957 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1956 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 1898 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1897 GAGAGAGTTCAAGAGTACGTGAAA 1874 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 4/85 (5%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG----TGTCA 463 ||||||||| |||||||||||||||||||||||| || |||||| ||||| || | Sbjct 1363 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTACGCGAGTCATTGGGACTTTGCGA 1304 Query 464 AACCCGTGCGCGTAATGAAAGTGAA 488 ||| |||||||||||||||| Sbjct 1303 TACCTAAAGGCGTAATGAAAGTGAA 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079966752500