Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1467 497 2e-138 seq1525 201 2e-49 seq316 107 3e-21 seq560 96.9 6e-18 >seq1467 Length=10200 Score = 497 bits (550), Expect = 2e-138 Identities = 288/295 (98%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 9139 TACTAAGCTGAATTACCATTGCGGCGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 9197 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9198 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 9257 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 9258 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT 9317 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9318 GAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 9377 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9378 CAAATGTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 9432 >seq1525 Length=581956 Score = 201 bits (222), Expect = 2e-49 Identities = 163/198 (82%), Gaps = 16/198 (8%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||||||||| ||||||||| || ||||| |||||| |||| ||||||||||||||| Sbjct 522173 GTCATCAGTAGGATAAAACTAATCTATCTCACGACGGTTTAAATCCAGCTCACGTTCCCC 522232 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||||||||| |||||| |||||||||||||| |||||||||||||| | Sbjct 522233 A------GGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCAG 522286 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||| |||| ||||||||||||| || ||||| ||||||||| || |||| Sbjct 522287 ACATCG---------AAAGTAACGTCGCTATGAGCGTTTGGCCGCCACAAGCTAG-TATC 522336 Query 210 CCTGTGGTAACTTTTCTG 227 ||| |||||||||||||| Sbjct 522337 CCTCTGGTAACTTTTCTG 522354 >seq316 Length=285 Score = 107 bits (118), Expect = 3e-21 Identities = 84/99 (85%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||| |||||||||||||||||||||||||||||| Sbjct 187 TACTGAGCAGGATTACTATCGCAATGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 246 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 | |||||||||||||||||||||||||||| || | ||| Sbjct 247 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGG 285 >seq560 Length=457 Score = 96.9 bits (106), Expect = 6e-18 Identities = 82/99 (83%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||| ||||||||||||||||||||||||||||||||||| ||||||| || || Sbjct 1 CGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAA 60 Query 244 A--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| | | | |||||||||||||||| ||||| Sbjct 61 ACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854386756800