Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1467 618 1e-174 seq668 271 2e-70 seq1525 214 6e-53 seq1521 154 5e-35 seq1172 149 2e-33 seq1229 136 1e-29 seq560 118 3e-24 seq1539 111 5e-22 >seq1467 Length=10200 Score = 618 bits (684), Expect = 1e-174 Identities = 399/435 (92%), Gaps = 5/435 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 9464 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 9523 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 9524 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 9583 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||||||||| Sbjct 9584 GGCCCGCGAAGGACCTTAATACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTCATTGA 9641 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| ||| | ||||||||||||||| |||||||| |||||||| || Sbjct 9642 ATAAGTAAAAAAACAATAGGAGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 9698 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 9699 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 9758 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 9759 TTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 9818 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9819 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 9878 Query 427 TGGCTACCTTAAGAG 441 ||||||||||||||| Sbjct 9879 TGGCTACCTTAAGAG 9893 >seq668 Length=614 Score = 271 bits (300), Expect = 2e-70 Identities = 153/155 (99%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 60 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 61 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACAT 120 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 155 >seq1525 Length=581956 Score = 214 bits (236), Expect = 6e-53 Identities = 187/229 (82%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCACTTATTCTACACCTCTCAAGTCAT 266 ||||||||||||||| ||| | | ||||||||||| |||||||||||| ||| Sbjct 522704 GTAGTGGTATTTCACCGGCGATGTTGCCATCTCCCACTTATGCTACACCTCTCATGTCTC 522763 Query 267 TTCACAAAGTCGGACTAGAGTCA---AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 | ||| | | ||||||||||| ||||||||| | |||| | | ||| || ||| Sbjct 522764 CTTACAGTGCCAGACTAGAGTCAGTAAGCTCAACAAGATCTTTTCTTCCCACTAATTTT- 522822 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 ||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||| Sbjct 522823 CCAAGCCCGTTCCCTTGGCGATAGTTTCGCTAG----TAGATAGGGACAGCGGGAATCTC 522878 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 522879 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGACTA 522927 Score = 91.5 bits (100), Expect = 5e-16 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||| || | | |||||||||| ||||||||| Sbjct 522447 CTTTTGCTCTACGTGAGATTTCTGTCCTTGCTAAACTGGCCTTAGGACATCTGCGTTATT 522506 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| |||||||| ||||||||| |||| | |||| || | |||||| Sbjct 522507 CTTTGACAGATGTATCGCCCCAGTCAAACTCCCTGCCTGGTAGTGTCCTCGAATCGGATC 522566 >seq1521 Length=804780 Score = 154 bits (170), Expect = 5e-35 Identities = 169/222 (76%), Gaps = 17/222 (8%) Strand=Plus/Plus Query 205 AGGGTAGTGGTATTTCACTTGCGCCGAAACGGC----TCCCACTTATTCTA-----CACC 255 || |||||||||||||||| ||| | | || ||| |||||| ||| || | Sbjct 310506 AGTGTAGTGGTATTTCACTGGCG---ATATTGCCATCTCCTACTTATGCTATTGTACATC 310562 Query 256 TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGC 315 | ||| ||| || | | | || |||||||||||||| || || || |||||| || Sbjct 310563 TATCATGTCTCTTTATAGTACCAGATTAGAGTCAAGCTCATTAGAGTTTT-TTTCCCTGC 310621 Query 316 TGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTG 375 | ||| |||| | | |||||||||| |||||||||||||||||||| |||| ||| Sbjct 310622 TAATTTTTCCAAACTCATTCCCTTGGCAGTGGTTTCGCTAGATAGTAG----GGACTGTG 310677 Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||||||||||||||||||||||| ||||||||||| ||| Sbjct 310678 GGAATCTCGTTAATCCATTCATGCGCATCACTAATTAGGTGA 310719 >seq1172 Length=185611 Score = 149 bits (164), Expect = 2e-33 Identities = 94/102 (92%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 430 CTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCA 489 || |||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct 13229 CTCCCTTAAGAAAGTCATAGTTACTCCCGTCGTTTATCCGCGCTTGCTTGAATTTTTTCA 13170 Query 490 CTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 | ||||||||||||||||||||||||||||| |||||||||| Sbjct 13169 CATTGACATTCAGAGCACTGGGCAGAAATCATATTGCGTCAA 13128 Score = 109 bits (120), Expect = 2e-21 Identities = 69/74 (93%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||| Sbjct 17228 AGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGTGTCACT--TTAGACGAC 17171 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 17170 GAGGCATTTGGCTA 17157 >seq1229 Length=111793 Score = 136 bits (150), Expect = 1e-29 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||| | ||| ||||||| |||||||||||| | ||||||| |||||||||||||| || Sbjct 15848 CTTAAAAAAGTTATAGTTAGTCCCGCCGTTTATCTGCGCTTGCTTGAATTTCTTCACGTT 15907 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||||||||||||||||||||||| |||||||||||| Sbjct 15908 GATATTCAGAGCACTGGGCAGAAATCATATTGCGTCAACA 15947 >seq560 Length=457 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 144 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 203 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 204 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 263 >seq1539 Length=1723265 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||||| Sbjct 1560622 TTACCCGCGCTTGCTTGAATTTCTTCACGTTGATATTCAGAGCACTAGGCAGAAATCACA 1560681 Query 523 TTGCGTCAACA 533 ||||||||||| Sbjct 1560682 TTGCGTCAACA 1560692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635174654400