Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1467 724 0.0 seq413 284 4e-74 seq514 194 5e-47 >seq1467 Length=10200 Score = 724 bits (802), Expect = 0.0 Identities = 466/505 (92%), Gaps = 3/505 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4292 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 4351 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4352 CCCCGGATCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 4411 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 4412 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 4471 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||| || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 4472 GGCCACTACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 4531 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAG-GAGCCCCGAAGGGCGTTGG 299 ||||||| ||||||||| ||||||| |||| |||||||| |||||| | ||||| |||| Sbjct 4532 CAAGGCCCTGCGATTCGAGAAGTTATCATGATTCACCAAGAGAGCCCAG-AGGGCATTGG 4590 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 4591 TTTTTAATCTAATAAATACATCCCTTCCGAAGTCGGGATTTTTAGCATGTATTAGCTCTA 4650 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||||||||||||||| |||| ||| |||||||||||||||||||||| || ||||| Sbjct 4651 GAATTACCACGGTTATCCAAGTAGCAAGATACTATCAAATAAACGATAACTTATATAATG 4710 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 4711 AGCCATTCGCAGTTTCGCCGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTT 4769 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 4770 GAGACAAGCATATGACTACTGGCAG 4794 >seq413 Length=338 Score = 284 bits (314), Expect = 4e-74 Identities = 207/239 (87%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 250 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 191 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 131 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 130 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 71 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 70 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGG 12 >seq514 Length=413 Score = 194 bits (214), Expect = 5e-47 Identities = 179/221 (81%), Gaps = 17/221 (8%) Strand=Plus/Minus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA----GTCGGGGTT---TTTAGCATG 348 |||||||| |||||||||| | ||||||| |||||| | ||| ||||| Sbjct 343 TTGGTTTTG-ATCTAATAAAAGCGTCCCTTCCATCACTGGTCGGGACTCTGTTTTGCATG 285 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||||||| |||||||| ||| || ||||| ||| ||| ||| | Sbjct 284 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACAATCTAATGAACCA 226 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGACAT 463 |||||||||||||||||||||||| ||||||| || ||| || | ||| |||||| Sbjct 225 TAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA---ATTCGGCATGCACTGAGACAT 169 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 168 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510376588800