Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq2708 138 8e-29 >seq2708 Length=213413 Score = 138 bits (152), Expect = 8e-29 Identities = 241/348 (69%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 6583 GCAAAAGAGAGAGAGATTAAGTGGAAAGGACGATTCTTTGCACTCATGAGTTGGCGCCTT 6642 || || ||| | ||| | ||| | |||| |||| |||||| | ||| |||| || Sbjct 50362 GCGAAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATT 50303 Query 6643 CGCGAGTACTTTGTATTTACTGAATATTTAATCAAGAAGAATGTGATCCCACTATTCAAA 6702 || ||||||||||| | |||||||| | |||||| | || | | ||| | ||||| Sbjct 50302 CGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAG 50243 Query 6703 GGATTGACCATGGCGGATGATCAAACGACTTTGATCAAGAAGATGATTCAGAACACAAGT 6762 || |||| |||| ||||||| ||| || |||| || |||||| ||| | | | Sbjct 50242 GGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCT 50183 Query 6763 GGACAAGGAGGAAATGATTACAAGCATATAACGTTTGCGAATCACATCGATTACGAAAAG 6822 |||||||||||| |||||| | | | || |||||||||| | || ||||| || Sbjct 50182 GGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAA 50123 Query 6823 TGGAACAATTTCCAAAGATATGAATCAACAGCTCCTGTTTTCCGGGTGATTGGACAATTT 6882 ||||| ||| || || | || ||||||| || || ||| |||| || || ||||| Sbjct 50122 TGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTC 50063 Query 6883 TTTGGTCTA-CCGAACTTATTTGTGCGAACGCATGAATTCTTTGAAAA 6929 |||| ||| || ||||| | || || ||||| | |||||||| Sbjct 50062 CTTGG-CTATCCTCACTTAATCACTCGGACACATGAGATATTTGAAAA 50016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36181054286088