Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq2708 125 5e-25 >seq2708 Length=213413 Score = 125 bits (138), Expect = 5e-25 Identities = 220/318 (69%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 6439 ATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTATTTGATTAAATTACATTTT 6498 ||||||||| | | || || ||||| | ||||| || |||| || || |||||| Sbjct 50317 ATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTT 50258 Query 6499 ATTCCTCTTTTTAAGGGTCTGACTGTCGCTGATGACATGACAACACTAATCAAGAAGATG 6558 |||| | || |||||||||||||| |||||||| | || ||| | || || ||| Sbjct 50257 GTTCCATTGTTCAAGGGTCTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATG 50198 Query 6559 ATGGATAATTCTTCAGGACAAGGATTAGATGATTATTCCAGAGTTTCTTATGCGAACCAT 6618 || || | || | ||||||||| | ||||||| | || | |||||| ||| Sbjct 50197 ATTGAGAGCTCGGCTGGACAAGGAGGATCTGATTATGAAACTGTCACCATTGCGAATCAT 50138 Query 6619 TTAGATTATGAGAAGTGGAATAACTATCAGCGTATAGAATCCAACGGGCCTA-CATTCAG 6677 |||| || ||||| |||||||| ||||| | | ||| | |||| | || | |||||| Sbjct 50137 GTAGACTACGAGAAATGGAATAATCATCAGAGGAAAGAGT-CAACAGACCCAGTATTCAG 50079 Query 6678 AGTAATGGGACAGTTTTTGGGTTATCCTAACCTAATATACAGAACTCATGAATTCTTTCA 6737 || ||||| || || | || |||||| || |||| | || ||||| | ||| | Sbjct 50078 GGTTATGGGGCAATTCCTTGGCTATCCTCACTTAATCACTCGGACACATGAGATATTTGA 50019 Query 6738 AAAATCTGTGATCTATTA 6755 ||| || ||||||||| Sbjct 50018 AAAGTCATGGATCTATTA 50001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36145855595264