Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq2708 122 7e-24 >seq2708 Length=213413 Score = 122 bits (134), Expect = 7e-24 Identities = 223/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 8022 AAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGA 8081 ||||||||||| ||||| || |||| | || ||| |||| ||||| ||| || | || Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300 Query 8082 GAATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGA 8141 || || ||||| || |||||||| || || || || ||| || | || | || Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240 Query 8142 TTAACAATGGCTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGA 8201 | || |||||||||| || || || ||| ||||||| | || | || ||||| Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180 Query 8202 CAAGGATTGGA--TAATTATGA---TGTGATCTATTTGGCCAATCACATCGATTATGAGA 8256 |||||| ||| | ||||||| ||| | | ||| || ||||| | || || |||| Sbjct 50179 CAAGGA--GGATCTGATTATGAAACTGTCA-CCATT--GCGAATCATGTAGACTACGAGA 50125 Query 8257 AATGGAATAACCACCAACGACAAGCCTCGACTGGTCCTGTATTTAAGGTGATGGGACAAT 8316 |||||||||| || || | ||| || || | || ||||| | ||| ||||| |||| Sbjct 50124 AATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAAT 50065 Query 8317 TCTTGGGTTACCCTAATTTAAT 8338 || | || || ||| | ||||| Sbjct 50064 TCCTTGGCTATCCTCACTTAAT 50043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41483257076576