Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_033034.1
Length=13000
Score E
Sequences producing significant alignments: (Bits) Value
seq2708 122 7e-24
>seq2708
Length=213413
Score = 122 bits (134), Expect = 7e-24
Identities = 223/322 (69%), Gaps = 10/322 (3%)
Strand=Plus/Minus
Query 8022 AAGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGA 8081
||||||||||| ||||| || |||| | || ||| |||| ||||| ||| || | ||
Sbjct 50359 AAGGAGCGGGAGTTGAAGACTATAGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGA 50300
Query 8082 GAATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGA 8141
|| || ||||| || |||||||| || || || || ||| || | || | ||
Sbjct 50299 GAGTACTTTGTGATGACTGAATACCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGT 50240
Query 8142 TTAACAATGGCTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGA 8201
| || |||||||||| || || || ||| ||||||| | || | || |||||
Sbjct 50239 CTGACTGTGGCTGATGATCTAACCACAGTGATGTCAAAAATGATTGAGAGCTCGGCTGGA 50180
Query 8202 CAAGGATTGGA--TAATTATGA---TGTGATCTATTTGGCCAATCACATCGATTATGAGA 8256
|||||| ||| | ||||||| ||| | | ||| || ||||| | || || ||||
Sbjct 50179 CAAGGA--GGATCTGATTATGAAACTGTCA-CCATT--GCGAATCATGTAGACTACGAGA 50125
Query 8257 AATGGAATAACCACCAACGACAAGCCTCGACTGGTCCTGTATTTAAGGTGATGGGACAAT 8316
|||||||||| || || | ||| || || | || ||||| | ||| ||||| ||||
Sbjct 50124 AATGGAATAATCATCAGAGGAAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAAT 50065
Query 8317 TCTTGGGTTACCCTAATTTAAT 8338
|| | || || ||| | |||||
Sbjct 50064 TCCTTGGCTATCCTCACTTAAT 50043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 41483257076576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |