Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq2708 125 6e-25 >seq2708 Length=213413 Score = 125 bits (138), Expect = 6e-25 Identities = 237/344 (69%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 6271 AGGGAGGTTTTTTGCTTTAATGTCTTGGGAGTTGAGAGAGTATTTTGTTATAACTGAGTG 6330 ||| || |||||||| || ||||| ||| || | ||||||| ||||| || ||||| | Sbjct 50336 AGGAAGATTTTTTGCATTGATGTCCTGGCAGATTCGAGAGTACTTTGTGATGACTGAATA 50277 Query 6331 GCTCATAAAGAAGTATTTCGTTCCGTTACT-AAGAGACTTAACAATGGCAGACGACTTGA 6389 || || ||| | |||| ||||| || | ||| | || | | |||| || || | | Sbjct 50276 CCTGATCAAGTTGCATTTTGTTCCATTGTTCAAGGGTCTGA-CTGTGGCTGATGATCTAA 50218 Query 6390 A-----TGATGTCATAAGTAAAATGTTGTCTAGTACATCAGGACAAGGGTTGGAT--GAC 6442 |||||||| |||||| | || | | |||||||| |||| || Sbjct 50217 CCACAGTGATGTCA-----AAAATGATTGAGAGCTCGGCTGGACAAGGA--GGATCTGAT 50165 Query 6443 TACTCAGTAGTATCTATTTCTAACCACTTAGATTACGAGAAATGGAACAATCACCAAAGG 6502 || | || | ||| | || || |||| |||||||||||||| ||||| || ||| Sbjct 50164 TATGAAACTGTCACCATTGCGAATCATGTAGACTACGAGAAATGGAATAATCATCAGAGG 50105 Query 6503 AAGGAATCAAATGATCCTGTATTCAGAGTGATGGGTCAATTTTTGGGAAAGCCTAACTTA 6562 || || |||| || || |||||||| || ||||| ||||| | || | ||| ||||| Sbjct 50104 AAAGAGTCAACAGACCCAGTATTCAGGGTTATGGGGCAATTCCTTGGCTATCCTCACTTA 50045 Query 6563 TTCACTAGGACACATGAGTTTTTCGAGAAATCGTTGATTTATTA 6606 ||||| ||||||||||| | || || || || | ||| ||||| Sbjct 50044 ATCACTCGGACACATGAGATATTTGAAAAGTCATGGATCTATTA 50001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40036910871808