Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1110 298 2e-78 seq247 141 3e-31 >seq1110 Length=63143 Score = 298 bits (330), Expect = 2e-78 Identities = 171/175 (98%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 46709 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 46650 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 46649 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTT 46590 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 46589 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 46535 Score = 190 bits (210), Expect = 7e-46 Identities = 170/214 (79%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | | Sbjct 33182 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAT 33123 Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 |||||| ||||||||||| |||||||||| | ||| | ||| | | Sbjct 33122 ATAACCGAAATTATATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 33063 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 33062 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 33003 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||||||||||||||||||||||||||||| Sbjct 33002 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 32969 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 33487 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 33428 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||||||||| ||||||| Sbjct 33427 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAATGTC 33381 >seq247 Length=259253 Score = 141 bits (156), Expect = 3e-31 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||| ||||||||||||| | ||| | ||| | | ||||||||||||||| || Sbjct 48341 CTCTCACTCATTCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGCTGAA 48400 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| |||||||||||| || ||| |||||| ||||||||||||| |||||||||||| Sbjct 48401 AAGGATCTTCTTTCCCCACTAATTATTCCAAGCTCGTTCCCTTGGCTTTGGTTTCGCTAG 48460 Query 357 ATAGTAGATAGGGACA 372 |||||||| ||||||| Sbjct 48461 ATAGTAGAAAGGGACA 48476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634608090304