Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1110 298 2e-78
seq247 141 3e-31
>seq1110
Length=63143
Score = 298 bits (330), Expect = 2e-78
Identities = 171/175 (98%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46709 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 46650
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 46649 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTT 46590
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 46589 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 46535
Score = 190 bits (210), Expect = 7e-46
Identities = 170/214 (79%), Gaps = 13/214 (6%)
Strand=Plus/Minus
Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG---- 227
||||| ||| || | ||||||| |||| ||||| |||||||||||||| | |
Sbjct 33182 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAT 33123
Query 228 ----CCGAAACGG-----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278
|||||| ||||||||||| |||||||||| | ||| | ||| | |
Sbjct 33122 ATAACCGAAATTATATATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 33063
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 33062 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 33003
Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372
||||||||||||||||||||||||||||||||||
Sbjct 33002 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 32969
Score = 95.1 bits (104), Expect = 4e-17
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||||||||| | | ||||||| | | |||| |||| |||||||| ||||||
Sbjct 33487 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 33428
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
||| | |||||| ||||||||| ||||||||||||||| |||||||
Sbjct 33427 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAATGTC 33381
>seq247
Length=259253
Score = 141 bits (156), Expect = 3e-31
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||| |||| ||||||||||||| | ||| | ||| | | ||||||||||||||| ||
Sbjct 48341 CTCTCACTCATTCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGCTGAA 48400
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||| |||||||||||| || ||| |||||| ||||||||||||| ||||||||||||
Sbjct 48401 AAGGATCTTCTTTCCCCACTAATTATTCCAAGCTCGTTCCCTTGGCTTTGGTTTCGCTAG 48460
Query 357 ATAGTAGATAGGGACA 372
|||||||| |||||||
Sbjct 48461 ATAGTAGAAAGGGACA 48476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634608090304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |