Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_032157.1 Length=1694 Score E Sequences producing significant alignments: (Bits) Value seq108 347 1e-92 >seq108 Length=548371 Score = 347 bits (384), Expect = 1e-92 Identities = 666/971 (69%), Gaps = 22/971 (2%) Strand=Plus/Minus Query 441 ATGCCTACAGGTCAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTAT 500 |||||||||||||| ||||| || || || ||||| || |||||||| || ||||||||| Sbjct 19040 ATGCCTACAGGTCAGCACCTTTCCAAGACCAATTCAGAGTTGAAGAACGACCCTCTTTAT 18981 Query 501 TTAGAAGCATTTTTTCCATCACCTAGCGAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAAT 560 | || || || ||||| || |||| || || | || || | |||||||| | ||| Sbjct 18980 CTTGAGGCTTTCTTTCCCTCGCCTACTGAGGAATTGGTACCTATAGCTGAAGAGTTGAAT 18921 Query 561 CATTTTACGGGTTTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTGT 620 |||||| | || ||||| ||||| | | ||||||| || | ||||| | ||| | Sbjct 18920 CATTTTCCCGGGTTTGATGGTTTGACCACTTTAATTAACGAGACGTATGAAAGTTTCTCG 18861 Query 621 TCACATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTTCT 680 || || ||||| || || || || || ||| | ||||| ||||||||| ||| || | Sbjct 18860 TCGCACAGTTTGAACTTTAAACGCTCAGTTCCTTTATCCGCTTATGCCTACTATCTTGCA 18801 Query 681 GTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACA 740 ||||| |||||||||||| || || |||| || |||| |||||| | || || Sbjct 18800 GTTTTAACGTGGGCCAGAGTTTTATATGTAAAGCGGCTAAACAAATATAAATTGACTACG 18741 Query 741 AATGAGATTGAATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCT 800 ||||||| ||||| || |||| |||||| ||||||||||||| | || ||||| | Sbjct 18740 GATGAGATCGAATTCGTAGATAGGATTTATAATCAAGGAAATTTTATTCTACCAAAAACC 18681 Query 801 GTTACTCTTTATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAG 860 | || | ||| | ||||| |||||||||||||| ||||| || ||| |||||| || Sbjct 18680 CTAACAATATATTTGTCTGGTTTTGGTAATTTTACCATTCCTTCTAGTACTGAATCGAAA 18621 Query 861 TTTAACACAAAGCCGTATTCTTACGATGATGCCGGTTATTTTGTTAATTTTGCTGAAGAA 920 || || || || || ||| |||| | || ||||||||| ||||||| | | Sbjct 18620 TTCAATACTAAACCATATGCTTATGGAGAGCATGGTTATTTTCAAAATTTTGATACGTTA 18561 Query 921 TTTTATACAGTAACGTCCTATCCTTGCATTTCTATATTTGCAGAAAGGATTATGAGAGAC 980 |||||| | | | ||||| || |||||| || ||||| || ||| | || Sbjct 18560 TTTTATTTATGCGCAGCGTATCCATG------TATATTCGCTGAAAGAATAATGCGTGAT 18507 Query 981 ATGGCGTTTACTGAGAA---TAATCGAGTCGGTGAAGCTTGGTCACCTAATGATATCGAG 1037 || | |||||| || || | | | ||| |||| ||| |||| | || Sbjct 18506 TTGAGTTATACTGATAACCCTACACAA--AGCCCAAG-TTGGCAACCAAATGGAAGTGAT 18450 Query 1038 CAAGAATGGAACACTCGGTGTCTAGGATATGCCCCATCCGTAGAATTGCCTTCATTACAG 1097 || || ||||| || ||| | || ||||| || || || || | || | | || Sbjct 18449 CACATTTGAAACACCCGATGTTTGGGTTATGCACCTTCTGTGCAACTTTCTGAAATGCAA 18390 Query 1098 TTGCAAATACTGAATATGGCGGGTATATCTTCTGAAAATTTTC-CTTCGGATTGTGAAGG 1156 | ||| ||| || || || | ||||| | |||||| |||| |||| | | || Sbjct 18389 GTTCAAGCACTTGATCGTGCTGGCGTTTCTTC-AACGATTTTCTCTTCCGATTATAACGG 18331 Query 1157 TTTACTTATAAATATTAGATTGTTAAATTCTATTCAAAAATATTTACTTGAAATACCTAG 1216 ||| | |||||| || ||| |||||| |||| ||||||||| ||||| || | Sbjct 18330 CTTATTAATAAATTCAAGGTTGATAAATTTAGTTCAGAAATATTTAGCCGAAATTCCGTG 18271 Query 1217 CTTTGAATCAGGTCCTATTCCTGCTAATTTAACTGGCTCGTTAGGTCAGTTTGTTGTTGA 1276 ||||| ||||||||||||||||| |||||| |||| ||||| || |||||| || || | Sbjct 18270 TTTTGAGTCAGGTCCTATTCCTGCAAATTTAGCTGGTTCGTTGGGCCAGTTTATTATTCA 18211 Query 1277 AGAAGTCGTTGAGAACGCAGTTGCCCTAGAT---GCTATTGATAATATAGGCTCTGCTTC 1333 | | || || || | | | | | || ||| | || | || || || | ||| Sbjct 18210 A-ATTCCGATGTCCACTCCAT--CTCAAAATGTAGCTGTAGACGACATTGGATCAGTTTC 18154 Query 1334 ATTTATTACTAAGTC-CCCATTATCTTGTCCGGGCTCATTATCTTATCTTGGAGGAAGTT 1392 || | | || | || || ||| | ||||| || ||| | ||||| || || || |||| Sbjct 18153 GTTAACTTCTCAATCGCCTCTTAGC-TGTCCAGGTTCAGTTTCTTACCTCGGTGGCAGTT 18095 Query 1393 TTCTTTATCGT 1403 |||| |||||| Sbjct 18094 TTCTATATCGT 18084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5309956984880