Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_033486.1 Length=1672 Score E Sequences producing significant alignments: (Bits) Value seq108 414 1e-112 >seq108 Length=548371 Score = 414 bits (458), Expect = 1e-112 Identities = 780/1134 (69%), Gaps = 35/1134 (3%) Strand=Plus/Minus Query 463 ACTATGCCAACTGGCCAACATTTGTCAAAAACAAATTCTGAGTTTAAAAATGATCCTTTA 522 || ||||| || || || || | || || || ||||| ||||| || || || ||| | Sbjct 19043 ACAATGCCTACAGGTCAGCACCTTTCCAAGACCAATTCAGAGTTGAAGAACGACCCTCTT 18984 Query 523 TATTTAGAAGCATTCATGCCTTCTCCTTCCGAGGAGTTGGTTCCAATAGCCGAAGAGTTA 582 ||| | || || ||| | || || ||| | ||||| ||||| || ||||| |||||||| Sbjct 18983 TATCTTGAGGCTTTCTTTCCCTCGCCTACTGAGGAATTGGTACCTATAGCTGAAGAGTTG 18924 Query 583 AATCATTTTCCGGGTTTTGATGGTTTAACCACATTAATTGAAGAAACATATGAAAATTTT 642 ||||||||||| || ||||||||||| ||||| |||||| | || || ||||||| ||| Sbjct 18923 AATCATTTTCCCGGGTTTGATGGTTTGACCACTTTAATTAACGAGACGTATGAAAGTTTC 18864 Query 643 TCTGCACATAATTTAAACTTTAAACGTTCTGTATCTTTATCTGCTTATTCTTATTATATT 702 || | || | ||| ||||||||||| || || ||||||| |||||| | || ||| || Sbjct 18863 TCGTCGCACAGTTTGAACTTTAAACGCTCAGTTCCTTTATCCGCTTATGCCTACTATCTT 18804 Query 703 ACTGTTTTGTCTTGGGCCCGTGTTTTATATTTGAAGAAAATGAATAAATATAAATTAACT 762 | ||||| | |||||| | ||||||||| | ||| | || ||||||||||| ||| Sbjct 18803 GCAGTTTTAACGTGGGCCAGAGTTTTATATGTAAAGCGGCTAAACAAATATAAATTGACT 18744 Query 763 ACTAACGAATTGGAGTTTATTGAAATGGTTTATGAACAAGGCAATTTCTTATTACCTAAG 822 || | || | || || | || | | ||||| | ||||| ||||| | |||| || Sbjct 18743 ACGGATGAGATCGAATTCGTAGATAGGATTTATAATCAAGGAAATTTTATTCTACCAAAA 18684 Query 823 AGTGTAATAATTTATCTTTCTGGTTTTGGTAATTTTAACATCCCTTCAGGCGTTGAATCA 882 | ||| ||| ||| | ||||||||||||||||||| ||| ||||| | |||||| Sbjct 18683 ACCCTAACAATATATTTGTCTGGTTTTGGTAATTTTACCATTCCTTCTAGTACTGAATCG 18624 Query 883 AAATTTAATTTAAAACCATATACTTATGACGAATTAGGATATTTTGTAGACTTTGACACG 942 ||||| ||| ||||||||| |||||| || || |||||| | | ||||| ||| Sbjct 18623 AAATTCAATACTAAACCATATGCTTATGGAGAGCATGGTTATTTTCAAAATTTTGATACG 18564 Query 943 AAATTTTATTTATGCACAAGTTATCCTAATATTTCTATTGCTGCTGAACGTGTAATGCGC 1002 ||||||||||||| || ||||| || | |||| |||||| | ||||||| Sbjct 18563 TTATTTTATTTATGCGCAGCGTATCC----ATGTATATT--CGCTGAAAGAATAATGCGT 18510 Query 1003 GATTTAGCATACACTGACAATCCT-GAAATTGGTGAAGCTTGGTCACCAGCCGAAATTGA 1061 ||||| || ||||| || ||| | | | ||| |||| |||| | || ||| Sbjct 18509 GATTTGAGTTATACTGATAACCCTACACAAAGCCCAAG-TTGGCAACCAAATGGAAGTGA 18451 Query 1062 ACAAGAGTGGAATACTCGCTGTATTGGTTACGCACCTTCCGTTATAATTCATGATATGCA 1121 || || || || || ||| | ||||| |||||||| || | || ||| ||||| Sbjct 18450 TCACATTTGAAACACCCGATGTTTGGGTTATGCACCTTCTGTGCAACTTTCTGAAATGCA 18391 Query 1122 ACGTGCCGTATTAGAACGTGCGCTCGTTCGCTCTGATAATTTTC-CTTCTGATTTAAATG 1180 | | | | | || ||||| |||| || | |||||| |||| |||| || | Sbjct 18390 AGTTCAAGCACTTGATCGTGCTGGCGTT-TCTTCAACGATTTTCTCTTCCGATTATAACG 18332 Query 1181 GTTTTCTTGTTAATGTTAGATTAATGAATAATATTCAAAAATATTTGTCCGAAATACCAA 1240 | || | | ||| || || || ||| |||| |||||||| ||||||| || Sbjct 18331 GCTTATTAATAAATTCAAGGTTGATAAATTTAGTTCAGAAATATTTAGCCGAAATTCCGT 18272 Query 1241 GCTTAGAGTCCGGTCCTATTCCTAAGAATCTAACTGGTTCTTTAGGTCAGTTTATCATTG 1300 | || ||||| |||||||||||| ||| || ||||||| || || |||||||| ||| Sbjct 18271 GTTTTGAGTCAGGTCCTATTCCTGCAAATTTAGCTGGTTCGTTGGGCCAGTTTATTATTC 18212 Query 1301 AAATTCCAACTGT----------TAGCGTTGGTGCTAACGATGAAATCGGGTCCCTTAGT 1350 ||||||| | ||| | || ||| || || || || || || Sbjct 18211 AAATTCCGA-TGTCCACTCCATCTCAAAATGTAGCTGTAGACGACATTGGATCAGTTTCG 18153 Query 1351 TTTACTTCAAAATCACCTTTGTCTTGTCCTGGTTCCATGTCTTTCCTAGGTGGTAGTTTC 1410 || ||||| |||| ||| | ||||| ||||| | |||| ||| ||||| ||||| Sbjct 18152 TTAACTTCTCAATCGCCTCTTAGCTGTCCAGGTTCAGTTTCTTACCTCGGTGGCAGTTTT 18093 Query 1411 TTGTATCGTGTCGA-CAAGGATCTGACCCCTGCACGT----CGTAAGTACTTTTATCCGT 1465 | |||||| |||| | |||| | | |||| || || || | || | ||| | Sbjct 18092 CTATATCGTATCGATCGCGGAT-TAA---GTGCAAGTAAAGCG-AAATTTTTCTTTCCTT 18038 Query 1466 ATACTAAAGAT--TCAGATACTCAAGAAGATAAAATTAATTTAAATTTACTTAATACTGG 1523 || ||| || || ||| | | |||| | |||||||||||| | ||| |||| Sbjct 18037 AT--CAAATATCAGCACCAACTAATGTTGATATTAATAATTTAAATTTCTTGAATTCTGG 17980 Query 1524 TTGGTCACCCATATTTAATCAAATATATCACTATAGTAATGTTCCCTTTAAACC 1577 ||||||||| ||||||| ||| || || || ||| ||| || || ||||| || Sbjct 17979 TTGGTCACCAATATTTAGTCATATTTACCATTATTCTAACGTACCATTTAACCC 17926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5239584060984