Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10066 232 2e-58 seq29520 217 5e-54 seq469 212 2e-52 seq9313 156 1e-35 seq19351 80.6 9e-13 >seq10066 Length=6480 Score = 232 bits (256), Expect = 2e-58 Identities = 146/158 (92%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 181 GGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGGCGAGGCATTTGGCTACCT 240 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 |||||||| | |||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 241 TAAGAGAGGCCTAGTTATTCCCGCCGTTTACCCGCGCTTACTTGAACTTCTTCACTTTGA 300 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| | |||||||||| ||| ||||||| Sbjct 301 CATTCAGAGCACTTGACAGAAATCACTTTGTGTCAACA 338 >seq29520 Length=1061 Score = 217 bits (240), Expect = 5e-54 Identities = 143/158 (91%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 376 GGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||| Sbjct 897 GGAATCTCGTTAATCCATTCATGCACGTCACTAATTTGATGGCGAGGCATTTCGCTACCT 956 Query 436 TAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGA 495 ||| |||| |||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 957 TAAAAGAGGTATAGTTACTCCCGCCGTTTACCCGAGCTAACTTGAATTTCTTCACTTTGA 1016 Query 496 CATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| |||||||| |||||||||||| ||| ||||||| Sbjct 1017 CATTTAGAGCACTTGGCAGAAATCACTTTGTGTCAACA 1054 >seq469 Length=146635 Score = 212 bits (234), Expect = 2e-52 Identities = 133/144 (92%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 366 AGGGACAGNNGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 121558 AGGGAAGGAAGGAATCTCGTTAATCCATTCATGCGCGTCACCAATTAGATGACGGGGCAT 121617 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| Sbjct 121618 TTGGCTACCTAAAGAGAGTCATAGTTACTCCCACCGTTTACCCGGGCTTACTTGAATTTC 121677 Query 486 TTCACTTTGACATTCAGAGCACTG 509 |||||||||||||||||||||||| Sbjct 121678 TTCACTTTGACATTCAGAGCACTG 121701 Score = 104 bits (114), Expect = 8e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 || ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| Sbjct 104448 GGATCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCTTTGGCTGTGGTTTCGCTAGAT 104507 Query 359 AGTAGATAGGGACAG 373 |||||||| |||||| Sbjct 104508 AGTAGATAAGGACAG 104522 Score = 80.6 bits (88), Expect = 9e-13 Identities = 84/108 (78%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCA-TGAGTCCCCCTTAGGACACCTGCGTTAT 65 || |||||||| | | ||||||| || || |||| | | |||||||| |||||| Sbjct 136734 CTGTTGCTCTATGTGTGGTTTCTGT-CTGCACTGAGCTGGCGTAGGGACACCTCCGTTAT 136792 Query 66 GGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||||||||| ||||||| Sbjct 136793 TATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAATGTC 136840 >seq9313 Length=8229 Score = 156 bits (172), Expect = 1e-35 Identities = 116/136 (85%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| | ||| | ||| | | |||||| ||||||||||| Sbjct 5238 CTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGCGTCAAGCTCAA 5297 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| ||| ||||||||||||| |||||| |||||| ||||| Sbjct 5298 CAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCTTTGGCTATGGTTTTGCTAG 5357 Query 357 ATAGTAGATAGGGACA 372 ||||||| |||||||| Sbjct 5358 ATAGTAGGTAGGGACA 5373 >seq19351 Length=1443 Score = 80.6 bits (88), Expect = 9e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| Sbjct 1443 AATTTCTTCACTTTGACATTTAGAGCACTTGGCAGAAATCACTTTGTGTCAACA 1390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634677390080