Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_032157.1 Length=1694 Score E Sequences producing significant alignments: (Bits) Value seq8948 224 1e-55 seq22891 170 2e-39 >seq8948 Length=9862 Score = 224 bits (248), Expect = 1e-55 Identities = 369/531 (69%), Gaps = 1/531 (0%) Strand=Plus/Plus Query 441 ATGCCTACAGGTCAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTAT 500 ||||| ||||| || || ||||| || || ||||| || ||||| || |||||| | ||| Sbjct 9003 ATGCCGACAGGACAGCATCTGTCGAAGACCAATTCTGAGTTGAAAAACGATCCTTTATAT 9062 Query 501 TTAGAAGCATTTTTTCCATCACCTAGCGAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAAT 560 ||||| || || ||||| |||| ||||| | || ||| | | ||||| | || Sbjct 9063 TTAGAGGCGTTCTTTCCTACACCATCAGAAGAATTGGTGCCGATTGCAGAAGAATTTAAC 9122 Query 561 CATTTTACGGGTTTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTGT 620 |||||| ||| || || |||||| | || ||||||| |||| ||||| || |||| | Sbjct 9123 CATTTTCCGGTGTTGGATGGTTTACCTACATTAATTAACGAAACATATGAAAACTTTTCT 9182 Query 621 TCACATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTTCT 680 |||||| ||||||||| || ||| || || | || ||||||||||||||| || Sbjct 9183 GCACATAATTTAAATTTTAAACGTAGCGTATCTCTTTCCGCGTATGCCTATTATATTGCT 9242 Query 681 GTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGACA 740 || || | ||||| | || |||||||||| ||||||||||| ||| | || || Sbjct 9243 GTATTTTCATGGGCACGCGTATTACATTTAAAGAAATTAAATAAATAACGCTTGACTACT 9302 Query 741 AATGAGATTGAATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTCT 800 | | || | || | || | |||| | || ||||||| ||||| |||| | Sbjct 9303 GAAAAACTTCAGTTCATTGACGTTTTTTATGAGCAGGGAAATTTTATACTTTCAAAAACG 9362 Query 801 GTTACTCTTTATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAAG 860 ||||| | | | | || || | ||||||||||| || || |||||||||||| |||| Sbjct 9363 GTTACGATATTTTTATCAGGTCTCGGTAATTTTACGATACCTTCAAGTGTTGAAACTAAA 9422 Query 861 TTTAACACAAAGCCGTATTCTTACGATGATGCCGGTTATTTTGTTAATTTTGCTGAAGAA 920 || || ||||| ||| ||| || || || || ||| |||||| | | | | Sbjct 9423 TTCAATACAAAATATTATAGTTATGACGAACATGGATAATTTAATAATTTCGAT-ACTTA 9481 Query 921 TTTTATACAGTAACGTCCTATCCTTGCATTTCTATATTTGCAGAAAGGATT 971 |||||| | || || || || | || |||||||| |||||| | ||| Sbjct 9482 TTTTATTTAACTACTTCTTACCCATTTATATCTATATTCGCAGAATGCATT 9532 Score = 78.8 bits (86), Expect = 1e-11 Identities = 129/179 (72%), Gaps = 23/179 (13%) Strand=Plus/Plus Query 3 CCCTTTTTAAATTATTAAAAGGTTCATCAACGAAGTGGAAGCCCCACAAAACCAAAACAA 62 |||||||||||| | |||||| || | |||||||| ||||||||| || | | | Sbjct 8634 CCCTTTTTAAATCTTAAAAAGGCA-ATTAGCGAAGTGGTAGCCCCACAGAAT-ACATTTA 8691 Query 63 AAGTTTTCC-TAAGACCTCGGAGAGGCA---ACAAAGCG-AC----AAAAGCGTAATATT 113 |||| ||| |||||||||||||||||| ||||||| || ||||||| |||| Sbjct 8692 AAGTGTTCGGTAAGACCTCGGAGAGGCACTCTCAAAGCGTACATTTAAAAGCGATTTATT 8751 Query 114 ATAATTAAAATCCAAGCGATAAAAGTACT-AGCGAGAATGTCTAGATACAATTTTAATA 171 | |||||| ||||| || ||||| ||||||| |||| |||||||||| Sbjct 8752 CT----------CAAGCG-TAAAATATCTGAGCGAAAATGTCTCGATATAATTTTAATA 8799 >seq22891 Length=1278 Score = 170 bits (188), Expect = 2e-39 Identities = 295/426 (69%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 441 ATGCCTACAGGTCAACACCTGTCTAAAACTAATTCCGAATTGAAGAATGATCCTCTTTAT 500 |||||||| || ||||| | || ||||| ||||||||||| ||||| ||||||||||| Sbjct 202 ATGCCTACGGGCCAACATTTATCAAAAACCAATTCCGAATTAAAGAACAATCCTCTTTAT 261 Query 501 TTAGAAGCATTTTTTCCATCACCTAGC-GAAGAGCTAGTTCCGTTGCCTGAAGAGCTCAA 559 |||| || || ||||| |||| ||| ||||| | || || | | || ||| | || Sbjct 262 CTAGAGGCTTTCATTCCAACACC-AGCGGAAGAATTGGTCCCAATTGCAGAGGAGTTGAA 320 Query 560 TCATTTTACGGGTTTTGACGGTTTAAGTTCAATAATTAATGAAAGTTATGATAATTTTTG 619 ||||| | || || || ||||| | | |||||||||||| || || ||||| | Sbjct 321 CTATTTTCCAGGGTTAGATGGTTTGACAACTTTAATTAATGAAACATACGAAAATTTCTC 380 Query 620 TTCACATAGTTTAAATTTCAAGCGTTCTGTTTCATTATCTAGTTATGCCTATTATATTTC 679 | |||| | ||||| ||| || | || | |||| | | ||||| ||||| Sbjct 381 TGCACAAAATTTAAGTTTTAAAAGAAGCGTGCCTATATCAGCACACACATATTACATTTC 440 Query 680 TGTTTTCTGTTGGGCCAGAGTTCTACATTTAAAACGTTTAAATAAATATCGCCTAACGAC 739 || || | ||||| | ||||| ||||||| ||||| |||| | |||| || Sbjct 441 AGTGTTTTAATGGGCTCGTATTCTATATTTAAAGAAATTAAACAAATGCGGATTAACTAC 500 Query 740 AAATGAGATTGAATTTGTCGATATGATTTACAATCAAGGAAATTACTTACTTCCAAAGTC 799 | || | ||||| ||||| | ||||| | || || |||||| | |||||||| || Sbjct 501 CGAGGAACTACAATTTATCGATGTAATTTATGAACAGGGCAATTACATCCTTCCAAAATC 560 Query 800 TGTTACTCTTTATCTTTCTGGCTTTGGTAATTTTACTATTCCATCAAGTGTTGAATCTAA 859 |||| | ||| | || | || || ||||||| || || || |||||||||| || Sbjct 561 GATTACCTTATATTTATCAGATTTCGGAAATTTTAAAATACCTTCTTGTGTTGAATCAAA 620 Query 860 GTTTAA 865 |||||| Sbjct 621 GTTTAA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5310196177600