Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6450 123 2e-23 seq347318 118 8e-22 seq6449 114 1e-20 seq303592 105 5e-18 seq298802 96.9 3e-15 seq17965 84.2 2e-11 >seq6450 Length=203 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||||||||| || || || || || ||||||||| | | ||| | Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGA 65 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||| |||||||| | || || | |||||||| ||||||||||| ||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || || ||||||| |||||||||||| | ||||| | || |||||| Sbjct 126 GAAAACATCCACTCTGAGATGTACAGTCTCCTCATTAACACTTACATC 173 >seq347318 Length=1073 Score = 118 bits (130), Expect = 8e-22 Identities = 283/427 (66%), Gaps = 6/427 (1%) Strand=Plus/Minus Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 ||||| ||||| || ||||| ||| |||||| |||| || | ||| || || || || Sbjct 1063 CCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACAAGGCCA 1004 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || ||| | ||||||||||| | ||| | || || || || || ||||| Sbjct 1003 TTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGGACATTG 944 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||||| ||||| || | ||| |||||| || || | || || | | ||| Sbjct 943 ACGCCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATG 884 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA---TGAACTAAGTTGGGGTTTG 66724 || |||||| |||| |||| ||||| || ||| |||| ||| ||||| |||||| Sbjct 883 CCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGA---GAGTTGAGGTTTG 827 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 ||||| || ||| |||||||| | || || || || || | |||| | Sbjct 826 ACGGTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCCGACAGCAGA 767 Query 66785 TTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATC 66844 ||||| || |||| |||||||||| || ||||| || || | ||| || |||| Sbjct 766 TTGTAGGTGATGATGGTGGCATCAATGTCCTCACCATGGATACCAACAGCAACTCTCATC 707 Query 66845 AGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 || | || || || || ||| ||| || | || ||| ||||| || |||||| Sbjct 706 AGCATGTGCTGCGGGCGCTCGGCCACTTTATTGTCAATGCGCAGCAAGTATGATCGTTCC 647 Query 66905 AGGGTCT 66911 || |||| Sbjct 646 AGAGTCT 640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGT 67120 |||| |||||||| ||||| | |||||| | || || || || ||||||| ||||| Sbjct 247 GTCTCCTTGTGCAGATTGGATACGGCGATTCTTGCAGCAAGCACTGCATAATCAGGATGC 188 Query 67121 AGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACA 67180 || |||| |||| || || |||||||||||| | ||||| ||| | || || || Sbjct 187 TTGGTGGTCATGGTGGCTGCTGTCTCAGCGGCCAAGTTGTCAAGCTCAACAGTGGTGACT 128 Query 67181 CCAGGATACAGGCCAGCAACGACTTTGA 67208 |||||||| || ||| | |||||||| Sbjct 127 CCAGGATAAAGTCCACTGATGACTTTGA 100 >seq6449 Length=203 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||||||||| || || || || || ||||||||| | | || | Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGA 65 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| ||||| |||||||| | || || | |||||||| ||||||||||| ||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || || ||||||| || ||||||||| | ||||| | || |||||| Sbjct 126 GAAAACATCCACTCTGAAATGTACAGTCTCCTCATTAACACTTACATC 173 >seq303592 Length=754 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| | |||| |||||||| || || || || ||||| ||| ||||||||||| Sbjct 361 CAGGTGATGGTTGACAACTTGGAATTCTCCAGAAAGCACACGGCGGGTGTAGATGTTGGA 302 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || |||| | || ||||||| || || || ||||| || ||||||||||| Sbjct 301 GGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCAGTTGGCAT 242 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 |||||| |||| || ||||| || | |||| | | || || | ||||| || Sbjct 241 GGGAGCAACCAGCAGGGAGTTGCGGACGCCGTGCTGCTTGATCTTCTCGCGCAACTCAGG 182 Query 65593 CCAGTTCCACA 65603 ||||||||||| Sbjct 181 CCAGTTCCACA 171 >seq298802 Length=733 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| | |||| |||||||| || || || || ||||| ||| ||||||||||| Sbjct 381 CAGGTGATGGTTGACAACTTGGAATTCTCCAGAGAGCACACGGCGGGTGTAGATGTTGGA 440 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || |||| | || ||||||| || || || ||||| || || |||||||| Sbjct 441 GGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCGGTTGGCAT 500 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 |||||| |||| || ||||| || | |||| | | || || | |||| || Sbjct 501 GGGAGCCACCAGCAGGGAGTTGCGGACGCCGTGCTGCTTGATCTTCTCGCGCAGCTCAGG 560 Query 65593 CCAGTTCCACA 65603 ||||||||||| Sbjct 561 CCAGTTCCACA 571 >seq17965 Length=210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| || |||||||||| ||||||||| || |||||||| ||||| |||||||||||||| Sbjct 210 GCAGGCGTCCTTGTACAACATGTACGGGGTTCCGGTCTCCACTTGTGACTCAATGATGGC 151 Query 66184 GTGCCA 66189 || ||| Sbjct 150 GTACCA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395717726603600