Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19749 199 1e-48 seq1745 111 5e-22 seq4828 104 7e-20 seq14075 100 9e-19 >seq19749 Length=5098 Score = 199 bits (220), Expect = 1e-48 Identities = 137/155 (88%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 267 TTTGCAAGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 208 Query 142 TCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAA 201 ||||||||| |||||||||||||||| | |||| ||||||||| || || ||| ||| | Sbjct 207 TCGAACCCTGATTCCCCGTTACCCGTCGCAACCACGGTAGGCCAATACCCGACCGTCGCA 148 Query 202 AGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 |||||||| |||||| ||||||| || | ||||| Sbjct 147 AGTTGATAAGGCAGACATTTGAAGGATGCGTCGCC 113 Score = 96.9 bits (106), Expect = 1e-17 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| || | ||| |||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 1748 GAGTCCCGCATCGGTATTTTCCGTCACTACCTCCCCGTGCCGGGAGTGGGTAATTTGCGC 1689 Query 89 GCCTGCTGCCTTCCTT 104 |||||||||||||||| Sbjct 1688 GCCTGCTGCCTTCCTT 1673 >seq1745 Length=1914 Score = 111 bits (122), Expect = 5e-22 Identities = 89/105 (85%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG-CTTATACTTAG 459 ||||| ||||||||||||||||| ||||| ||| ||| || | | | ||| ||| || Sbjct 10 AACGACAACTGATTTAATGAGCCTTTCGCGGTTCCACCTTA--GTTCGGCTTGCACTGAG 67 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 68 ACATGCATGGCTTAGTCTTTGAGACGAGCATATGACTACTGGCAG 112 >seq4828 Length=12507 Score = 104 bits (114), Expect = 7e-20 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAA 401 |||||||||||||||||||||||||| |||||||||||| || || || ||| | | Sbjct 3496 GCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGGGTGTGGCACGATCCTGTGA 3555 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||| ||||||||||||||||| ||||| ||| ||| Sbjct 3556 ACGACAACTGATTTAATGAGCCTTTCGCGGTTCCAC 3591 >seq14075 Length=5330 Score = 100 bits (110), Expect = 9e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5271 AATTTGCAAGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 5330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510101680896