Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2720 161 2e-37 seq19 89.7 9e-16 seq2153 77.0 6e-12 seq647 77.0 6e-12 >seq2720 Length=46158 Score = 161 bits (178), Expect = 2e-37 Identities = 207/279 (74%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 43 CCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAA 102 ||||||| || |||| ||| || || ||||||||||||||||||||||| | || Sbjct 21285 CCTTCACCGGTAGTGCAGGGTGGCTAGCGAGTTTACTTTGAAAAAATTAGAGTGCTTCAA 21226 Query 103 GCAGGCCTT--TGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTAT 160 || ||| || ||| ||||| ||||||||||||||||||||| | |||||||| Sbjct 21225 GCGGGCTTTAGTGCCTGAATATTCGTGCATGGAATAATAGAATAGGATCTT-GGTTCTAT 21167 Query 161 TTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTC 220 ||||||||||| | ||| ||||| |||| ||||| || |||||| | |||| Sbjct 21166 TTTGTTGGTTTTCTGACCCGAGATAATGGTTAAGAGGGACAGACGGGGGCATTCGTATCG 21107 Query 221 AATTGTCAGAGGTGAAATTCTTGGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCAC 279 || ||||||| |||||||||| || | |||| | ||||||||||| || | Sbjct 21106 CTGCGTGAGAGGTGGAATTCTTGGACCGTAGCG-AGACGCCCGACTGCGAAAGCATTTGC 21048 Query 280 CAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| |||| ||||||||||| |||||||||| || || Sbjct 21047 CAAGAATGTCTTCATTAATCA-AGAACGAAAGTCAGAGG 21010 >seq19 Length=3776289 Score = 89.7 bits (98), Expect = 9e-16 Identities = 84/103 (82%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---GCCTTTGCTCGAATAC--ATTAGC 128 ||| ||||||| ||||||||||| | ||||||| || || ||||||| | | || Sbjct 2532810 TTTTCTTTGAACAAATTAGAGTGCTTAAAGCAGGCAGCAGCCGCCCGAATACCGAGT-GC 2532752 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||||||||| ||||||||| | |||||||||||||||||||| Sbjct 2532751 ATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT 2532710 >seq2153 Length=284988 Score = 77.0 bits (84), Expect = 6e-12 Identities = 83/106 (78%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---GCCTTTGCTCGAATAC--ATT 125 || ||||| ||||| ||||||||||| | ||||||| || | || ||||||| | | Sbjct 228953 ACGTTTACCTTGAACAAATTAGAGTGCTTAAAGCAGGCAGCAGTCGCCCGAATACCGAGT 229012 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 |||| ||| || ||||||||| | |||||||||||| ||||||| Sbjct 229013 -GCATCAAATCATGGAATAGGAC-TTCGGTTCTATTTTTTTGGTTT 229056 >seq647 Length=614709 Score = 77.0 bits (84), Expect = 6e-12 Identities = 69/84 (82%), Gaps = 6/84 (7%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA----CCGCC 182 |||||||||||| ||||||||| | ||||||||||||||| |||| | ||| ||| Sbjct 387836 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTAGTTT-TCGGAATCCCCGAG 387779 Query 183 GTAATGATTAATAGGGATAGTCGG 206 |||||||| |||||||| || ||| Sbjct 387778 GTAATGATCAATAGGGACAGACGG 387755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914973103616