Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blattella_20germanica_20[genbank_20GCA_5F000762945.1_202014-10-02] 24,792 sequences; 2,037,201,033 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2720 161 4e-37 seq803 102 3e-19 seq80 102 3e-19 seq637 96.9 1e-17 seq444 84.2 9e-14 >seq2720 Length=46158 Score = 161 bits (178), Expect = 4e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 18054 TGAGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTG 17995 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || |||||||||| ||||||||||||||||| | |||||||||||||||| Sbjct 17994 GAGGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAGGGGCGA 17938 Score = 122 bits (134), Expect = 4e-25 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| || ||| ||||||| || ||| |||||| || ||||| ||||||| Sbjct 18826 GAGTCGAGTTGCCTGAGAACGCAGCTCAAAGAGGGTGGTAAACCTCATCTAAGGCTAAAT 18767 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | Sbjct 18766 AT-GACCACGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAA 18708 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| | ||| | |||| || Sbjct 18707 GAGAGAGTTCAAGAGGGCGTGAAACCGCTGAGAAGGAAACG 18667 >seq803 Length=1069773 Score = 102 bits (112), Expect = 3e-19 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 76 GGTAAATTTCTTCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGA 134 |||||| | | ||||| ||||||||| | ||| ||||||||||||| ||||||| |||| Sbjct 295157 GGTAAACTCCATCTAAGGCTAAATAT-GACCACGAGACCGATAGCGAACAAGTACCGTGA 295099 Query 135 TCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 ||||| ||||||| |||||| | |||||||| || || |||||||| Sbjct 295098 GGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAACAGTACGTGAAA 295051 >seq80 Length=1947070 Score = 102 bits (112), Expect = 3e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||||||||| ||| |||| ||| |||||| ||| |||||| ||||| Sbjct 1925809 AGATGGTGAACTATGCCTCCTCAGGAAGAAGTCAGGGGAAACCCTGTTGGAGGTCCGCAG 1925868 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| | || ||||||||| ||| | ||||||||||||||| Sbjct 1925869 CGATTCTGACATGTAAATCGATCTTCAGAGCTGGGTATAGGGGCGA 1925914 Score = 98.7 bits (108), Expect = 4e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 ||||||||||| ||||||| | | ||| ||| |||||| ||| |||||| ||||| Sbjct 1936763 AGATGGTGAACAATGCCTGTTAAAGACGAAATCAG-GGAAACCCTGATGGAGGTCCGCAG 1936821 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||| |||||||||||| | |||||||||||||||| Sbjct 1936822 CGATTCTGACGTGTAAATCGATCGTCTGAGTTGGGTATAGGGGCGA 1936867 >seq637 Length=912179 Score = 96.9 bits (106), Expect = 1e-17 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 578 AGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAG 637 |||||||||||||||||| ||| |||| ||| |||||| ||| |||||| |||| Sbjct 18604 AGATGGTGAACTATGCCTCCTCAGGAAGAAGTCAGGGGAAACCCTGTTGGAGGTCTGCAG 18663 Query 638 CGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||| |||| ||||||||| ||| | ||||||||||||||| Sbjct 18664 CTATTCTGACGTGTAAATCGATCTTCAGAGCTGGGTATAGGGGCGA 18709 >seq444 Length=1053808 Score = 84.2 bits (92), Expect = 9e-14 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 68 AAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAG 126 || |||| |||||| | | ||||| ||||||||| | ||| ||||||||||||| ||||| Sbjct 428253 AAGTGGGTGGTAAACTCCATCTAAGGCTAAATAT-GACCACGAGACCGATAGCGAACAAG 428195 Query 127 TAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || |||| ||||| ||||||| ||| ||||| Sbjct 428194 TATCGTGAGGGAAAGTTGAAAAGAACTCTGGAA 428162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079468211600